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BioC 3.2: BUILD report for flowType on perceval

This page was generated on 2015-08-24 10:52:23 -0700 (Mon, 24 Aug 2015).

Package 361/1071HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowType 2.7.0
Nima Aghaeepour
Snapshot Date: 2015-08-23 16:24:14 -0700 (Sun, 23 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowType
Last Changed Rev: 104490 / Revision: 107696
Last Changed Date: 2015-06-02 18:04:04 -0700 (Tue, 02 Jun 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowType
Version: 2.7.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowType
StartedAt: 2015-08-23 18:50:07 -0700 (Sun, 23 Aug 2015)
EndedAt: 2015-08-23 18:50:39 -0700 (Sun, 23 Aug 2015)
EllapsedTime: 32.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowType
###
##############################################################################
##############################################################################


* checking for file ‘flowType/DESCRIPTION’ ... OK
* preparing ‘flowType’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Rcpp
Loading required package: BH
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning in fun(libname, pkgname) : error in rgl_init

Error: processing vignette 'flowType.Rnw' failed with diagnostics:
 chunk 13 (label = xtabout) 
Error in `colnames<-`(`*tmp*`, value = c("p-value", "adjusted p-value",  : 
  length of 'dimnames' [2] not equal to array extent
Execution halted