| Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages |
This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 655 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 90/118 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| rhdf5 2.46.1 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the rhdf5 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: rhdf5 |
| Version: 2.46.1 |
| Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL rhdf5 |
| StartedAt: 2024-03-08 15:32:55 -0500 (Fri, 08 Mar 2024) |
| EndedAt: 2024-03-08 15:33:05 -0500 (Fri, 08 Mar 2024) |
| EllapsedTime: 9.9 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL rhdf5 ### ############################################################################## ############################################################################## * installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’ * installing *source* package ‘rhdf5’ ... ** using staged installation configure: creating ./config.status config.status: creating src/external_filters.h ** libs gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5.c -o H5.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5A.c -o H5A.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5D.c -o H5D.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5E.c -o H5E.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5F.c -o H5F.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5G.c -o H5G.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5I.c -o H5I.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5L.c -o H5L.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5O.c -o H5O.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5P.c -o H5P.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5R.c -o H5R.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5S.c -o H5S.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5S_extras.c -o H5S_extras.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5T.c -o H5T.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5T_extras.c -o H5T_extras.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5Z.c -o H5Z.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c H5constants.c -o H5constants.o g++ -std=gnu++14 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c HandleList.cpp -o HandleList.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c HandleListWrap.c -o HandleListWrap.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c bit64conversion.c -o bit64conversion.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c external_filters.c -o external_filters.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c h5dump.c -o h5dump.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c h5ls.c -o h5ls.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c h5testLock.c -o h5testLock.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c h5writeDataFrame.c -o h5writeDataFrame.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c printdatatype.c -o printdatatype.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c utils.c -o utils.o gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/include' -I/usr/local/include -fpic -g -O2 -Wall -c wrap.c -o wrap.o g++ -std=gnu++14 -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o rhdf5.so H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5R.o H5S.o H5S_extras.o H5T.o H5T_extras.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o /home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/lib/libhdf5.a -L/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-rhdf5/00new/rhdf5/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5)