Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
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Package 55/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicFeatures 1.54.3  (landing page)
H. Pagès
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/GenomicFeatures
git_branch: RELEASE_3_18
git_last_commit: b42fb34
git_last_commit_date: 2024-01-30 16:08:12 -0500 (Tue, 30 Jan 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for GenomicFeatures on nebbiolo2


To the developers/maintainers of the GenomicFeatures package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GenomicFeatures
Version: 1.54.3
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicFeatures
StartedAt: 2024-03-08 15:45:16 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:47:11 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 114.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicFeatures
###
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* checking for file ‘GenomicFeatures/DESCRIPTION’ ... OK
* preparing ‘GenomicFeatures’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GenomicFeatures.Rmd’ using knitr

Quitting from lines 405-406 [supportedUCSCtables] (GenomicFeatures.Rmd)
Error: processing vignette 'GenomicFeatures.Rmd' failed with diagnostics:
attempt to set an attribute on NULL
--- failed re-building ‘GenomicFeatures.Rmd’

SUMMARY: processing the following file failed:
  ‘GenomicFeatures.Rmd’

Error: Vignette re-building failed.
Execution halted