Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
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Package 37/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq2 1.42.1  (landing page)
Michael Love
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/DESeq2
git_branch: RELEASE_3_18
git_last_commit: 1c1c928
git_last_commit_date: 2024-03-06 10:49:39 -0500 (Wed, 06 Mar 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

BUILD results for DESeq2 on nebbiolo2


To the developers/maintainers of the DESeq2 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DESeq2
Version: 1.42.1
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
StartedAt: 2024-03-08 15:43:26 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:45:53 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 146.9 seconds
RetCode: 0
Status:   OK  
PackageFile: DESeq2_1.42.1.tar.gz
PackageFileSize: 1.998 MiB

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
###
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* checking for file ‘DESeq2/DESCRIPTION’ ... OK
* preparing ‘DESeq2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘DESeq2_1.42.1.tar.gz’
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid uid value replaced by that for user 'nobody''
Warning: invalid uid value replaced by that for user 'nobody'
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid gid value replaced by that for user 'nobody''
Warning: invalid gid value replaced by that for user 'nobody'