Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:47 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 24/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocVersion 3.18.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/BiocVersion
git_branch: RELEASE_3_18
git_last_commit: 70680b8
git_last_commit_date: 2023-11-15 09:37:59 -0500 (Wed, 15 Nov 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

CHECK results for BiocVersion on nebbiolo2


To the developers/maintainers of the BiocVersion package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BiocVersion
Version: 3.18.1
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD check --install=check:BiocVersion.install-out.txt --library=/home/hpages/bbs-3.18-bioc-R41/R/site-library --timings BiocVersion_3.18.1.tar.gz
StartedAt: 2024-03-08 16:01:32 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 16:01:44 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 11.6 seconds
RetCode: 0
Status:   OK  
CheckDir: BiocVersion.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD check --install=check:BiocVersion.install-out.txt --library=/home/hpages/bbs-3.18-bioc-R41/R/site-library --timings BiocVersion_3.18.1.tar.gz
###
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* using log directory ‘/home/hpages/bbs-3.18-bioc-R41/meat/BiocVersion.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘BiocVersion/DESCRIPTION’ ... OK
* this is package ‘BiocVersion’ version ‘3.18.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocVersion’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

BiocVersion.Rcheck/00install.out

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL BiocVersion
###
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* installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’
* installing *source* package ‘BiocVersion’ ...
** using staged installation
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocVersion)

Tests output


Example timings

BiocVersion.Rcheck/BiocVersion-Ex.timings

nameusersystemelapsed
BiocVersion-pkg0.0020.0000.001