Back to Build/check report for BioC 3.17
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-01-02 09:00:40 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MutationalPatterns on palomino5


To the developers/maintainers of the MutationalPatterns package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1298/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MutationalPatterns 3.9.0  (landing page)
Mark van Roosmalen
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/MutationalPatterns
git_branch: master
git_last_commit: ff6be07
git_last_commit_date: 2022-11-01 11:14:41 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: MutationalPatterns
Version: 3.9.0
Command: chmod a+r MutationalPatterns -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MutationalPatterns
StartedAt: 2022-12-28 19:17:56 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 19:25:06 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 429.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r MutationalPatterns -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MutationalPatterns
###
##############################################################################
##############################################################################


* checking for file 'MutationalPatterns/DESCRIPTION' ... OK
* preparing 'MutationalPatterns':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Introduction_to_MutationalPatterns.Rmd' using rmarkdown
Quitting from lines 1466-1469 (Introduction_to_MutationalPatterns.Rmd) 
Error: processing vignette 'Introduction_to_MutationalPatterns.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `stringr::str_c()`:
! Can't recycle `..1` (size 96) to match `..3` (size 384).
--- failed re-building 'Introduction_to_MutationalPatterns.Rmd'

SUMMARY: processing the following file failed:
  'Introduction_to_MutationalPatterns.Rmd'

Error: Vignette re-building failed.
Execution halted