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This page was generated on 2023-01-02 09:00:26 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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BUILD BIN results for DifferentialRegulation on palomino5


To the developers/maintainers of the DifferentialRegulation package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 523/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DifferentialRegulation 1.3.0  (landing page)
Simone Tiberi
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/DifferentialRegulation
git_branch: master
git_last_commit: 22e3ca4
git_last_commit_date: 2022-11-01 11:27:01 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: DifferentialRegulation
Version: 1.3.0
Command: rm -rf DifferentialRegulation.buildbin-libdir && mkdir DifferentialRegulation.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DifferentialRegulation.buildbin-libdir DifferentialRegulation_1.3.0.tar.gz
StartedAt: 2022-12-29 05:04:18 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 05:05:14 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 55.7 seconds
RetCode: 0
Status:   OK  
PackageFile: DifferentialRegulation_1.3.0.zip
PackageFileSize: 1.136 MiB

Command output

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### Running command:
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###   rm -rf DifferentialRegulation.buildbin-libdir && mkdir DifferentialRegulation.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=DifferentialRegulation.buildbin-libdir DifferentialRegulation_1.3.0.tar.gz
###
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* installing *source* package 'DifferentialRegulation' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcpp_MCMC.cpp -o Rcpp_MCMC.o
Rcpp_MCMC.cpp: In function 'Rcpp::NumericVector Rcpp_MCMC(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<14, Rcpp::PreserveStorage> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::ListOf<Rcpp::Matrix<14> > >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const bool&, const double&, const double&, const double&)':
Rcpp_MCMC.cpp:279:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const Rcpp::traits::storage_type<13>::type' {aka 'const int'} [-Wsign-compare]
  279 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC.cpp:144:10: warning: unused variable 'tmp_1' [-Wunused-variable]
  144 |   double tmp_1, tmp_2, tmp_3;
      |          ^~~~~
Rcpp_MCMC.cpp:144:17: warning: unused variable 'tmp_2' [-Wunused-variable]
  144 |   double tmp_1, tmp_2, tmp_3;
      |                 ^~~~~
Rcpp_MCMC.cpp:144:24: warning: unused variable 'tmp_3' [-Wunused-variable]
  144 |   double tmp_1, tmp_2, tmp_3;
      |                        ^~~~~
Rcpp_MCMC.cpp:365:10: warning: 'll_original' may be used uninitialized [-Wmaybe-uninitialized]
  365 |       ll += ll_original;
      |       ~~~^~~~~~~~~~~~~~
Rcpp_MCMC.cpp:270:21: note: 'll_original' was declared here
  270 |     double ll_prop, ll_original, ll = 0;
      |                     ^~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcpp_MCMC_sce.cpp -o Rcpp_MCMC_sce.o
Rcpp_MCMC_sce.cpp: In function 'Rcpp::NumericVector Rcpp_MCMC_sce(const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::ListOf<Rcpp::Matrix<14> > >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const bool&, const double&, const double&, const double&)':
Rcpp_MCMC_sce.cpp:234:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const Rcpp::traits::storage_type<13>::type' {aka 'const int'} [-Wsign-compare]
  234 |         for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC_sce.cpp:145:10: warning: unused variable 'tmp_1' [-Wunused-variable]
  145 |   double tmp_1, tmp_2, tmp_3;
      |          ^~~~~
Rcpp_MCMC_sce.cpp:145:17: warning: unused variable 'tmp_2' [-Wunused-variable]
  145 |   double tmp_1, tmp_2, tmp_3;
      |                 ^~~~~
Rcpp_MCMC_sce.cpp:145:24: warning: unused variable 'tmp_3' [-Wunused-variable]
  145 |   double tmp_1, tmp_2, tmp_3;
      |                        ^~~~~
Rcpp_MCMC_sce.cpp:320:10: warning: 'll_original' may be used uninitialized [-Wmaybe-uninitialized]
  320 |       ll += ll_original;
      |       ~~~^~~~~~~~~~~~~~
Rcpp_MCMC_sce.cpp:227:21: note: 'll_original' was declared here
  227 |     double ll_prop, ll_original, ll = 0;
      |                     ^~~~~~~~~~~
g++ -shared -s -static-libgcc -o DifferentialRegulation.dll tmp.def RcppExports.o Rcpp_MCMC.o Rcpp_MCMC_sce.o -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc-rtools43/meat/DifferentialRegulation.buildbin-libdir/00LOCK-DifferentialRegulation/00new/DifferentialRegulation/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'DifferentialRegulation' as DifferentialRegulation_1.3.0.zip
* DONE (DifferentialRegulation)