Sean Davis
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/GEOquery |
| git_branch: RELEASE_3_13 |
| git_last_commit: 028b84d |
| git_last_commit_date: 2021-05-19 11:36:47 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the GEOquery package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GEOquery.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 757/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GEOquery 2.60.0 (landing page) Sean Davis
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GEOquery |
| Version: 2.60.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GEOquery_2.60.0.tar.gz && rm -rf GEOquery.buildbin-libdir && mkdir GEOquery.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GEOquery.buildbin-libdir GEOquery_2.60.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GEOquery_2.60.0.zip && rm GEOquery_2.60.0.tar.gz GEOquery_2.60.0.zip |
| StartedAt: 2021-10-14 09:42:04 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:45:38 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 213.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GEOquery_2.60.0.tar.gz && rm -rf GEOquery.buildbin-libdir && mkdir GEOquery.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GEOquery.buildbin-libdir GEOquery_2.60.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GEOquery_2.60.0.zip && rm GEOquery_2.60.0.tar.gz GEOquery_2.60.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
5 12.8M 5 705k 0 0 1824k 0 0:00:07 --:--:-- 0:00:07 1822k
38 12.8M 38 5024k 0 0 3609k 0 0:00:03 0:00:01 0:00:02 3609k
79 12.8M 79 10.2M 0 0 4416k 0 0:00:02 0:00:02 --:--:-- 4416k
100 12.8M 100 12.8M 0 0 4693k 0 0:00:02 0:00:02 --:--:-- 4693k
install for i386
* installing *source* package 'GEOquery' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GEOquery'
finding HTML links ... done
GDS-class html
GEOData-accessors html
GEOData-class html
GEODataTable-class html
GPL-class html
GSE-class html
GSM-class html
coercion html
getDirListing html
getGEO html
getGEOSuppFiles html
getGEOfile html
getGSEDataTables html
gunzip html
parseGEO html
parseGSEMatrix html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GEOquery' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GEOquery' as GEOquery_2.60.0.zip
* DONE (GEOquery)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GEOquery' successfully unpacked and MD5 sums checked