| Back to the "Multiple platform build/check report" | A B C D E F [G] H I J K L M N O P Q R S T U V W X Y Z |
| Package 167/419 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| GenomeGraphs 1.10.0 Steffen Durinck
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | [ OK ] | |||||
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | TIMEOUT | skipped | skipped | |||||
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | TIMEOUT | OK | |||||
| pelham | Mac OS X Leopard (10.5.8) / i386 | TIMEOUT | skipped | skipped |
| Package: GenomeGraphs |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings GenomeGraphs_1.10.0.tar.gz |
| StartedAt: 2011-03-31 06:11:05 -0700 (Thu, 31 Mar 2011) |
| EndedAt: 2011-03-31 06:15:07 -0700 (Thu, 31 Mar 2011) |
| EllapsedTime: 242.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: GenomeGraphs.Rcheck |
| Warnings: 0 |
* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/GenomeGraphs.Rcheck’ * using R version 2.12.2 (2011-02-25) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK * this is package ‘GenomeGraphs’ version ‘1.10.0’ * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package ‘GenomeGraphs’ can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking package vignettes in ‘inst/doc’ ... SKIPPED * checking PDF version of manual ... OK
GenomeGraphs.Rcheck/00install.out:
* installing *source* package ‘GenomeGraphs’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (GenomeGraphs)
GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:
| name | user | system | elapsed | |
| AnnotationTrack-class | 0.004 | 0.000 | 0.001 | |
| BaseTrack-class | 0 | 0 | 0 | |
| DisplayPars-class | 0.000 | 0.004 | 0.002 | |
| DisplayPars | 0.344 | 0.008 | 4.043 | |
| ExonArray-class | 0.004 | 0.000 | 0.004 | |
| Gene-class | 0 | 0 | 0 | |
| GeneModel-class | 0.160 | 0.004 | 0.163 | |
| GeneRegion-class | 0.000 | 0.000 | 0.001 | |
| GenericArray-class | 0.000 | 0.000 | 0.001 | |
| GenomeAxis-class | 0 | 0 | 0 | |
| HighlightRegion-class | 0.000 | 0.000 | 0.001 | |
| Ideogram-class | 0.000 | 0.004 | 0.000 | |
| ImplementsTrackOverlay-class | 0.000 | 0.000 | 0.001 | |
| Legend-class | 0.000 | 0.000 | 0.001 | |
| MappedRead-class | 0 | 0 | 0 | |
| Overlay-class | 0.000 | 0.000 | 0.001 | |
| RectangleOverlay-class | 0 | 0 | 0 | |
| Segmentation-class | 0.000 | 0.000 | 0.001 | |
| Smoothing-class | 0.000 | 0.000 | 0.001 | |
| TextOverlay-class | 0.000 | 0.000 | 0.001 | |
| Title-class | 0.000 | 0.000 | 0.001 | |
| TrackOverlay-class | 0 | 0 | 0 | |
| Transcript-class | 0 | 0 | 0 | |
| TranscriptRegion-class | 0.000 | 0.000 | 0.001 | |
| cn | 0.000 | 0.000 | 0.001 | |
| exonProbePos | 0 | 0 | 0 | |
| gdObject-class | 0.000 | 0.000 | 0.001 | |
| gdPlot | 1.652 | 0.008 | 201.684 | |
| getPar | 0.000 | 0.000 | 0.002 | |
| ideogramTab | 0.004 | 0.000 | 0.003 | |
| intensity | 0.000 | 0.000 | 0.001 | |
| makeAnnotationTrack | 0.028 | 0.000 | 0.027 | |
| makeBaseTrack | 0.004 | 0.000 | 0.002 | |
| makeExonArray | 0.000 | 0.000 | 0.002 | |
| makeGene | 0.004 | 0.000 | 0.001 | |
| makeGeneModel | 0.000 | 0.000 | 0.001 | |
| makeGeneRegion | 0.000 | 0.000 | 0.002 | |
| makeGenericArray | 0.000 | 0.000 | 0.001 | |
| makeGenomeAxis | 0 | 0 | 0 | |
| makeIdeogram | 0.000 | 0.000 | 0.001 | |
| makeLegend | 0.000 | 0.000 | 0.001 | |
| makeRectangleOverlay | 0.068 | 0.000 | 0.066 | |
| makeSegmentation | 0.052 | 0.000 | 0.052 | |
| makeSmoothing | 0.072 | 0.000 | 0.072 | |
| makeTextOverlay | 0.06 | 0.00 | 0.06 | |
| makeTitle | 0.004 | 0.000 | 0.001 | |
| makeTranscript | 0.000 | 0.000 | 0.001 | |
| probestart | 0 | 0 | 0 | |
| segEnd | 0 | 0 | 0 | |
| segStart | 0.004 | 0.000 | 0.000 | |
| segments | 0 | 0 | 0 | |
| seqDataEx | 0.020 | 0.000 | 0.022 | |
| setPar | 0.012 | 0.000 | 0.012 | |
| showDisplayOptions | 0.000 | 0.000 | 0.001 | |
| unrData | 0 | 0 | 0 | |
| unrNProbes | 0 | 0 | 0 | |
| unrPositions | 0 | 0 | 0 | |
| yeastCons1 | 0 | 0 | 0 | |