Package: BufferedMatrixMethods

Version: 1.3.0

Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check BufferedMatrixMethods_1.3.0.tar.gz

StartedAt: 2007-12-11 05:31:04 -0800 (Tue, 11 Dec 2007)

EndedAt: 2007-12-11 05:32:03 -0800 (Tue, 11 Dec 2007)

EllapsedTime: 59.5 seconds

RetCode: 0

Status: OK

CheckDir: BufferedMatrixMethods.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BufferedMatrixMethods-Ex.R ... OK
* checking examples ... OK
* creating BufferedMatrixMethods-manual.tex ... OK
* checking BufferedMatrixMethods-manual.tex ... OK

/loc/home/biocbuild/bbs-2.2-bioc/meat/BufferedMatrixMethods.Rcheck
* Installing *source* package 'BufferedMatrixMethods' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/BufferedMatrix/include"   -fpic  -g -O2 -Wall -c init_package.c -o init_package.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/BufferedMatrix/include"   -fpic  -g -O2 -Wall -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:342: warning: unused variable ‘i’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:376: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:591: warning: unused variable ‘current_mode’
preprocess_bm.c: At top level:
preprocess_bm.c:451: warning: ‘min’ defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** help
 >>> Building/Updating help pages for package 'BufferedMatrixMethods'
     Formats: text html latex example 
  rmapreprocess.bufferedmatrix      text    html    latex
** building package indices ...
* DONE (BufferedMatrixMethods)