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Package 155/658HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.17.15
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/crlmm
Last Changed Rev: 72808 / Revision: 74774
Last Changed Date: 2013-01-22 21:14:35 -0800 (Tue, 22 Jan 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: crlmm
Version: 1.17.15
Command: rm -rf crlmm.buildbin-libdir && mkdir crlmm.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=crlmm.buildbin-libdir crlmm_1.17.15.tar.gz
StartedAt: 2013-03-25 05:40:46 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 05:41:39 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 52.9 seconds
RetCode: 0
Status:  OK  
PackageFile: crlmm_1.17.15.zip
PackageFileSize: 4.513 MiB

Command output


install for i386

* installing *source* package 'crlmm' ...
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c gtypeCaller.c -o gtypeCaller.o
gtypeCaller.c: In function 'gtypeCallerPart1':
gtypeCaller.c:91:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gtypeCaller.c: In function 'gtypeCallerPart2':
gtypeCaller.c:315:89: warning: variable 'ptr2trim' set but not used [-Wunused-but-set-variable]
gtypeCaller.c:314:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124:15: warning: unused variable 'n_ignore' [-Wunused-variable]
utils.c: In function 'normalizeBAF':
utils.c:178:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
utils.c:180:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m32 -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'AffyGW.Rnw' 
   'CopyNumberOverview.Rnw' 
   'IlluminaPreprocessCN.Rnw' 
   'Infrastructure.Rnw' 
   'genotyping.Rnw' 
   'gtypeDownstream.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'crlmm' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c gtypeCaller.c -o gtypeCaller.o
gtypeCaller.c: In function 'gtypeCallerPart1':
gtypeCaller.c:91:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gtypeCaller.c: In function 'gtypeCallerPart2':
gtypeCaller.c:315:89: warning: variable 'ptr2trim' set but not used [-Wunused-but-set-variable]
gtypeCaller.c:314:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124:15: warning: unused variable 'n_ignore' [-Wunused-variable]
utils.c: In function 'normalizeBAF':
utils.c:178:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
utils.c:180:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'crlmm' as crlmm_1.17.15.zip
* DONE (crlmm)