Package: DrugVsDisease

Version: 1.99.5

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DrugVsDisease_1.99.5.tar.gz

StartedAt: 2013-03-24 04:35:40 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 04:41:33 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 352.8 seconds

RetCode: 0

Status:  OK

CheckDir: DrugVsDisease.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DrugVsDisease.Rcheck'
* using R version 3.0.0 beta (2013-03-21 r62346)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DrugVsDisease/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DrugVsDisease' version '1.99.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DrugVsDisease' can be installed ... [12s/12s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [211s/241s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
DrugVsDisease-package 66.496 15.500  93.066
classifyprofile       44.899 11.651  65.518
selectrankedlists     45.521 10.834  58.040
generateprofiles      10.093  1.246  19.114
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'runTests.R' [7s/10s]
 [8s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'DrugVsDisease' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'DrugVsDisease.Rnw' using 'UTF-8' 
** testing if installed package can be loaded
* DONE (DrugVsDisease)

name	user	system	elapsed
DrugVsDisease-package	66.496	15.500	93.066
classifyprofile	44.899	11.651	65.518
customClust	0.004	0.005	0.033
customdb	0.005	0.006	0.011
customedge	0.004	0.005	0.009
customsif	0.004	0.006	0.030
generateprofiles	10.093	1.246	19.114
profiles	0.007	0.007	0.013
selectrankedlists	45.521	10.834	58.040
selprofile	0.005	0.007	0.028