Changes in version 1.7.0                        

BUG FIXES

  - Fixed the error messages displayed by getDegTx(),
    k_qsvs(),get_qsvs(), getPCs(), DEqual() and qSVA() to handle
    different types of situations.

  - Improved unit tests for getDegTx(), k_qsvs(),get_qsvs(),
    getPCs(),DEqual() and qSVA().

                        Changes in version 1.6.0                        

BUG FIXES

  - getDegTx() can handle ENSEMBL IDs as input.
  - DEqual() can handle ENSEMBL IDs as input.
  - Improved unit tests for getDegTx() and DEqual().

                        Changes in version 1.5.3                        

BUG FIXES

  - Fixed the error messages displayed by k_qsvs() to handle different
    types of situations. We implemented this update with @HediaTnani,
    @reneegf, and @lahuuki.

                        Changes in version 1.5.2                        

BUG FIXES

  - Fixed a bug in qSVA() which was not passing sig_transcripts to
    getDegTx(). Related to
    https://github.com/LieberInstitute/qsvaR/issues/29.
  - Fixed the documentation to highlight when users should use
    set.seed() to ensure the reproducibility of their results. Related
    to https://github.com/LieberInstitute/qsvaR/issues/28.

                        Changes in version 1.5.1                        

SIGNIFICANT USER-VISIBLE CHANGES

  - Hedia Tnani is now the maintainer of qsvaR.

                       Changes in version 0.99.0                        

NEW FEATURES

  - This is the initial version of the second iteration of the qSVA
    framework, which was initially described by Jaffe et al, PNAS, 2017
    https://doi.org/10.1073/pnas.1617384114.