Changes in version 1.0.7                        

  - Feb 1, 2022
  - fix vst()
  - add plots plotScatterDensity() and meanSdPlot() for VST
  - add vignette vst.Rmd

                        Changes in version 1.0.6                        

  - Jan 31, 2022
  - add logo, example data

                        Changes in version 1.0.5                        

  - Dec 27, 2021
  - add dmn.mle()
  - use generic crumblr() function

                        Changes in version 1.0.4                        

  - Dec 23, 2021
  - Update vignette
  - export clr()

                        Changes in version 1.0.3                        

  - Dec 20, 2021
  - fix vst bug

                        Changes in version 1.0.2                        

  - Dec 20, 2021
  - add vst

                        Changes in version 1.0.1                        

  - Oct 29, 2021
  - handle data.frame

                        Changes in version 1.0.0                        

  - Oct 28, 2021
  - Initial version

                       Changes in version 0.99.21                       

  - March 10, 2025
  - address Bioc comments

                       Changes in version 0.99.20                       

  - March 10, 2025
  - address Bioc comments

                       Changes in version 0.99.19                       

  - Feb 12, 2025
  - address Bioc comments:
    https://github.com/Bioconductor/Contributions/issues/3699#issuecomment-2640806359

                       Changes in version 0.99.17                       

  - Feb 6, 2025
  - address Bioc comments:
    https://github.com/Bioconductor/Contributions/issues/3699#issuecomment-2640806359

                       Changes in version 0.99.13                       

  - Jan 14, 2025
  - Bioc submission

                       Changes in version 0.99.11                       

  - June 14, 2024
  - improve documentation
  - add plotForest()
  - add standardize()

                       Changes in version 0.99.10                       

  - June 12, 2024
  - add diffTree() and plotTreeTestBeta()
  - regularize weight estimates

                       Changes in version 0.99.9                        

  - Feb 1, 2024
  - add crumblr(..,method=method) for method %in% c("clr", "clr_2class")

                       Changes in version 0.99.8                        

  - May 12, 2023
  - in treeTest() add argument shrink.cov = TRUE. This will give
    slightly different p-values, but protects against false positives
    when the number of features get large compared to the sample size

                       Changes in version 0.99.7                        

  - April 5, 2023
  - fix plotting bug in plotTreeTest()

                       Changes in version 0.99.6                        

  - Dec 7, 2022
  - update docs, add vignette, dependencies

                       Changes in version 0.99.5                        

  - Nov 29, 2022
  - bug fix and update docs

                       Changes in version 0.99.4                        

  - enforce variancePartition version dependency

                       Changes in version 0.99.3                        

  - buildClusterTree() uses cosine distance by default
  - treeTest() now uses method="treeTest" by default

                       Changes in version 0.99.2                        

  - update plotTreeTest()
  - Use variancePartition dependency on GitHub

                       Changes in version 0.99.1                        

  - add functions to perform mvTest() on trees

                       Changes in version 0.99.0                        

  - Jun 24, 2022
  - Fix version number for compatibility with Bioconductor