Changes in version 0.99.9                        

Our package is now on Bioconductor! See the link
https://bioconductor.org/packages/devel/bioc/html/QRscore.html

                       Changes in version 0.99.8                        

General

  - Added a NEWS.md file to document package changes, improving
    transparency and user engagement.

  - Enhanced quality assurance by incorporating unit tests using the
    testthat package.

DESCRIPTION

  - Optimized dependency management by categorizing packages in Depends,
    Imports, and Suggests according to Bioconductor guidelines.

README

  - Updated README.md to include installation instructions directly from
    Bioconductor, ensuring consistency with Bioconductor standards.

Man pages

  - Introduced a package-level man page to enhance documentation.

  - Added a runnable example for the exported function rzinbinom.

R code

  - Updated function naming to adhere to Bioconductor guidelines,
    removing periods from function names and prefixing non-exported
    functions with a dot (e.g., .dzinbinom).

  - Replaced sapply() with vapply() for more robust and predictable
    outputs.

  - Changed sequence generation from 1:... to seq_len() or seq_along()
    and replaced assignment = with <-.

  - Minimized the use of paste in condition signals and discouraged the
    default use of suppressWarnings().

Check

  - Addressed R CMD check warnings and notes, including mismatches in
    documentation and code. Updated R version dependency from 3.5.0
    to 4.4.0.

  - Handled top-level file issues and improved several other aspects
    based on BiocCheck recommendations.

Vignette

  - Renamed the vignette to QRScore.Rmd for easier access and updated
    with BiocStyle for improved formatting.

  - Consolidated settings in knitr::opts_chunk$set and adhered to R
    conventions for assignments.

Citation

  - A citation file is added