CHANGES IN VERSION 1.5.5
---------------------------
FIX
o Migrate vignette to new BiocStyle
o Remove unused function join_all
o Use parameter not integer number
o Using testthat for unit test
CHANGES IN VERSION 1.5.4
---------------------------
FEATURES
o Better documentation for isoCorrection function. Add
proper authors and citation.
CHANGES IN VERSION 1.5.3
---------------------------
FEATURES
o Better colors for polar plot of isomiRs
FIX
o Fix notes during R CHECK for variables inside dplyr/ggplot functions
o Use roxygen2 for NAMESPACE
CHANGES IN VERSION 1.5.2
---------------------------
FIX
o Remove TMB dependency
CHANGES IN VERSION 1.5.1
---------------------------
FEATURES
o Add new polar figure to plot all isomiRs at the same time
o Add NLQO distribution to correct expression knowing sequencing
bias [Argyropoulos et al, 2017]
o Improve data documentation
CHANGES IN VERSION 1.3.5
---------------------------
FEATURES
o Add isomiRs naming to documentation
o Add design to the object to get better usability
o Remove non-template addition with C/G nucleotides by default (canonicalAdd)
o Remove sequences with mutations and more than one miRNA hit
CHANGES IN VERSION 1.3.4
---------------------------
FIXES
o Fix removing false mutations from the raw files. Change sequences
to correct the nucleotide at the specific position.
FEATURES
o Improve code to remove error sequencing from raw data
o Improve code to show the raw data with isoSelect
CHANGES IN VERSION 1.3.3
---------------------------
FIXES
o Fix data with correct headers name
CHANGES IN VERSION 1.3.2
---------------------------
OTHERS
o Preparing migration to new isomiRs naming using mirTOP naming system
CHANGES IN VERSION 1.3.1
---------------------------
OTHERS
o Add option to IsomirDataSeqFromFiles to decide
when to consider mutations as reals
CHANGES IN VERSION 1.1.5
---------------------------
OTHERS
o Suppress message from readr when reading
o Add instruction of how to create DESeq2 object from ids one.
CHANGES IN VERSION 1.1.4
---------------------------
OTHERS
o Add mRNA-miRNA integration
CHANGES IN VERSION 1.1.2
---------------------------
OTHERS
o Update version dependecy for packages
CHANGES IN VERSION 0.99.18
---------------------------
BUG FIXES
o Avoid removing isomiRs with mutation and reference non-detected
CHANGES IN VERSION 0.99.13
---------------------------
NEW FEATURES
o Modify main class to have all the information in metadata
o Improve docs with more information in return values
o Add minimum data to test creation of main class