CHANGES IN VERSION 0.99.7 * Delete intermediate files in vignettes directory CHANGES IN VERSION 0.99.6 Updates per the review for bioconductor: * Add VariantAnnotation to imports instead of suggests in DESCRIPTION * Move CC-GWAS vignette from vignettes folder to inst/docs CHANGES IN VERSION 0.99.4 Updates per the review for bioconductor: * Remove LICENSE file - not needed as standard GPL-3 license is already in DESCRIPTION * Use importFrom in NAMESPACE instead of import * New package-level manual page * refactored code (vectorized where possible, all functions defined separately, added verbose argument) * Added utility function to convert VCF to dataframe for use in CCAFE methods * BiocCheck note: removed redundant stop/warn in signal conditions * BiocCheck note: shortened some functions * BiocCheck note: lines not longer than 80 characters * BiocCheck note: indents 4 spaces (not tab) * Using BiocStyle and TOC in CCAFE.rmd * No more redunant library calls in vignettes * fixed format of Integration with Bioconductor header * Added section name for Session Information to vignettes CHANGES IN VERSION 0.99.0 First devel version of the package. Contains 2 functions: * CaseControl_AF * CaseControl_SE