Changes in version 1.3.1                        

  - Citation update
  - Other minor corrections

                        Changes in version 1.0.3                        

  - Bug fix for example data.
  - Other minor changes.

                        Changes in version 1.0.2                        

  - Bug fix for single sample analysis.

                        Changes in version 1.0.1                        

  - Updates to URL, email and citation.

                       Changes in version 0.99.21                       

  - Updated lists of gene names and TCGA sample IDs in
    tcga_brca_luma_dataset.RData.

                       Changes in version 0.99.20                       

  - Created new dataset with another random seed in
    tcga_brca_luma_dataset.RData.

                       Changes in version 0.99.19                       

  - Added lists of gene names and TCGA sample IDs in
    tcga_brca_luma_dataset.RData.

                       Changes in version 0.99.18                       

  - R version update.

                       Changes in version 0.99.17                       

  - Minor corrections.

                       Changes in version 0.99.16                       

  - Minor corrections.

                       Changes in version 0.99.15                       

  - Adjust sample dataset creating script to the use of
    SummarizedExperiment.

                       Changes in version 0.99.14                       

  - Documentation updates.

                       Changes in version 0.99.13                       

  - SummarizedExperiment input for calculate_difference.
  - Changed SE_assay parameter name to assayno.
  - Documentation and example updates.

                       Changes in version 0.99.12                       

  - Documentation and example updates.

                       Changes in version 0.99.11                       

  - SummarizedExperiment corrections.
  - Vignette updates.

                       Changes in version 0.99.10                       

  - SummarizedExperiment output for calculate_diversity.
  - Vignette updates.
  - Example dataset updates.

                       Changes in version 0.99.9                        

  - Documentation and code formatting updates.

                       Changes in version 0.99.8                        

  - Examples for diversity calculation functions.

                       Changes in version 0.99.7                        

  - More flexible single calculate_entropy function instead of separate
    naive and Laplace entropy.
  - P-value correction method can be set by user.
  - Formatting corrections.

                       Changes in version 0.99.5                        

  - Updated DESCRIPTION.
  - Formatting corrections.
  - Corrected bug in data description.
  - Updated methods for obtaining class of input.
  - Added verbose argument for functions.

                       Changes in version 0.99.4                        

  - Code and documentation formatting corrections.
  - Updates to example dataset.

                       Changes in version 0.99.3                        

  - SummarizedExperiment input type updated in calculate_diversity, new
    argument: SE_assay.

  - Documentation, vignette updated.

                       Changes in version 0.99.2                        

  - SummarizedExperiment input type instead of ExpressionSet.

                       Changes in version 0.99.1                        

  - Correction: unnecessary file removed.

                       Changes in version 0.99.0                        

  - Submitted to Bioconductor.