Changes in version 3.12.0:

    o   neqc(), nec() and normexp.fit.control() now give user-friendly error
	messages when no negative control probes or no regular probes are
	found.

Changes in version 3.10.0:

    o   New function voom() allows RNA-Seq experiments to be analysed using
	the standard limma pipeline. An RNA-Seq case study is added to
	User's Guide.

    o   treat(), roast() and mroast() can now estimate and work with a trend
	on the prior variance, bringing them into line with eBayes().

    o   barcodeplot() and barcodeplot2() merged into one function.

    o   removeBatchEffect() can now correct for two batch factors.

    o   plotMDS is now an S3 generic function.  This allows MDS plots to be
	redrawn with new labels without needing to repeat the distance or
	scaling calculations. New S4 class "MDS" to hold the
	multidimensional scaling information output from plotMDS.

    o   getEAWP() now gets probe annotation from the expression rownames of
	an EList object, if no other probe annotation is available.

    o   topRomer() now ranks gene sets by secondary columns as well the
	primary criterion specified, to give a more meaningful ranking when
	the p-values are tied.

    o   wilcoxGST() now accepts signed or unsigned test statistics. Change
	to p-value calculation in geneSetTest() when rank.only=FALSE to
	avoid zero p-values and follow recommendation of Phipson and Smyth
	(SAGMB, 2010).

    o   plotMA() now recognizes ElistRaw and EList objects appropriately.

    o   Default span for normalizeCyclicLoess increased from 0.4 to 0.7.
	Speed improved when weights=NULL.

    o   Weaver case study (Section 11.5) in User's Guide is updated and
	rewritten. Data classes ElistRaw and Elist now described in the
	quick start section of the User's Guide.  Other minor updates to
	User's Guide.

    o   Bug fix for normalizeBetweenArrays() when object is an EListRaw and
	method="cyclicloess".  Previously this function was applying
	cyclicloess to the raw intensities, then logging.  Now it logs
	first, then applies cyclicloess.

    o   Bug fix to avereps() for EList objects x when x$other is not empty.