To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("minfi")

In most cases, you don't need to download the package archive at all.

minfi

This package is for version 2.9 of Bioconductor; for the stable, up-to-date release version, see minfi.

Analyze Illumina's 450k methylation arrays

Bioconductor version: 2.9

Tools for analyzing and visualizing Illumina's 450k array data

Author: Kasper Daniel Hansen, Martin Aryee

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("minfi")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("minfi")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minfi")

PDF		minfi.pdf
PDF		Reference Manual

biocViews	DNAMethylation, DataImport, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.0.0
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	Artistic-2.0
Depends	methods, Biobase, lattice, reshape, mclust
Imports	beanplot, RColorBrewer, nor1mix, siggenes, limma, preprocessCore, crlmm, matrixStats
LinkingTo
Suggests	IlluminaHumanMethylation450kmanifest, minfiData, ff
SystemRequirements
Enhances
URL
Depends On Me	IlluminaHumanMethylation450kmanifest, minfiData
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	minfi_1.0.0.tar.gz
Windows Binary	minfi_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/minfi/tree/release-2.9
Package Short Url	http://bioconductor.org/packages/minfi/
Package Downloads Report	Download Stats

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