\name{getCategoryList} \alias{getCategoryList} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Retrieve categories containing given genes } \description{ Function to retrieve specified category IDs containing given genes. } \usage{ getCategoryList(geneVector, lib, categoryType) } %- maybe also 'usage' for other objects documented here. \arguments{ \item{geneVector}{ an Entrez gene IDs vector } \item{lib}{ annotation library to be used to retrieve categories terms. } \item{categoryType}{ type of category } } \details{ The current version only supports Bioconductor team maintained annotation libraries, like 'org.Bt.eg.db', 'org.Ce.eg.db', 'org.Cf.eg.edu', 'org.Dm.eg.db', 'org.Dr.eg.db', 'org.EcK12.eg.db', 'org.EcSakai.eg.db', 'org.Gg.eg.db', 'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Rn.eg.db' and 'org.Ss.eg.db'. } \value{ return a category list, names of the list are category IDs and elements are genes IDs. } \references{ ~put references to the literature/web site here ~ } \author{ Gang Feng, Pan Du and Simon Lin } \seealso{ ~~objects to See Also as \code{\link{help}}, ~~~ } \examples{ getCategoryList(c('56458', '16590'), 'org.Mm.eg.db', 'PATH') } % Add one or more standard keywords, see file 'KEYWORDS' in the % R documentation directory. \keyword{ methods }