## @knitr 'setup', include = FALSE, cache = FALSE
library("knitr")
opts_chunk$set(fig.align = 'center', 
               fig.show = 'hold', 
               par = TRUE,
               prompt = FALSE,
               comment = NA)
options(replace.assign = TRUE, 
        width = 65)


## @knitr environment, cache=FALSE, echo=FALSE
suppressPackageStartupMessages(library(MSnbase))


## @knitr pSet
getClass("pSet")


## @knitr MSnExp
getClass("MSnExp")


## @knitr MSnSet
getClass("MSnSet")


## @knitr MSnProcess
getClass("MSnProcess")


## @knitr MIAPE
getClass("MIAPE")


## @knitr Spectrum
getClass("Spectrum")


## @knitr Spectrum1
getClass("Spectrum1")


## @knitr Spectrum2
getClass("Spectrum2")


## @knitr ReporterIons
getClass("ReporterIons")


## @knitr NAnnotatedDF
getClass("NAnnotatedDataFrame")


## @knitr sessioninfo, results='asis', echo=FALSE, cache=FALSE
toLatex(sessionInfo())