siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 2.6

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("siggenes")    

Documentation

PDF	R Script	siggenes Manual
PDF		siggenesRnews.pdf

Reference Manual

Details

biocViews	Statistics, MultipleComparisons, Microarray, GeneExpression, SNP, ExonArray, DifferentialExpression
Depends	methods, multtest, Biobase, splines
Imports
Suggests	affy, annotate, genefilter, KernSmooth, scrime
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	KCsmart
Imports Me	charm
Suggests Me	GeneSelector, XDE, logicFS, oneChannelGUI
Version	1.22.0

Package Downloads

Package Source	siggenes_1.22.0.tar.gz
Windows Binary	siggenes_1.22.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	siggenes_1.22.0.tgz
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