affxparser

Affymetrix File Parsing SDK

Bioconductor version: 2.6

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author: Henrik Bengtsson, James Bullard, Robert Gentleman, Kasper Daniel Hansen, Martin Morgan

Maintainer: Kasper Daniel Hansen

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("affxparser")    

Documentation

Reference Manual

Details

biocViews	Infrastructure, DataImport
Depends	R
Imports
Suggests	R.utils, AffymetrixDataTestFiles
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	AffyTiling, ITALICS, Starr, pdInfoBuilder, rMAT
Imports Me	GeneRegionScan, affyILM, oligo
Suggests Me
Version	1.20.0

Package Downloads

Package Source	affxparser_1.20.0.tar.gz
Windows Binary	affxparser_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	affxparser_1.20.0.tgz
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