ShortRead

Base classes and methods for high-throughput short-read sequencing data.

Bioconductor version: 2.6

Base classes, functions, and methods for representation of high-throughput, short-read sequencing data.

Author: Martin Morgan, Michael Lawrence, Simon Anders

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ShortRead")    

Documentation

PDF	R Script	An introduction to ShortRead
PDF		ShortRead_and_HilbertVis.pdf

Reference Manual

Details

biocViews	DataImport, Sequencing, HighThroughputSequencing, QualityControl
Depends	methods, IRanges, GenomicRanges, Biostrings, lattice, Rsamtools
Imports	IRanges, GenomicRanges, Biostrings, Biobase, hwriter, Rsamtools
Suggests	biomaRt
System Requirements
License	Artistic-2.0
URL
Depends On Me	ChIPseqR, DEGseq, Rolexa, chipseq, girafe, segmentSeq
Imports Me	ChIPseqR, ChIPsim, Rolexa, chipseq
Suggests Me	Genominator, PICS, Rsamtools
Version	1.6.2

Package Downloads

Package Source	ShortRead_1.6.2.tar.gz
Windows Binary	ShortRead_1.6.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ShortRead_1.6.2.tgz
Package Downloads Report	Download Stats