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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GeoMxWorkflows
###
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* checking for file ‘GeoMxWorkflows/DESCRIPTION’ ... OK
* preparing ‘GeoMxWorkflows’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GeomxTools_RNA-NGS_Analysis.Rmd’ using rmarkdown
2025-04-25 13:06:43.902 R[39835:760445612] XType: com.apple.fonts is not accessible.
2025-04-25 13:06:43.915 R[39835:760445612] XType: XTFontStaticRegistry is enabled.

Quitting from GeomxTools_RNA-NGS_Analysis.Rmd:900-926 [CVheatmap]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `multiassign()`:
! envir argument is not an environment
---
Backtrace:
    ▆
 1. ├─NanoStringNCTools::assayDataApply(...)
 2. └─NanoStringNCTools::assayDataApply(...)
 3.   └─NanoStringNCTools (local) .local(X, MARGIN, FUN, ...)
 4.     └─NanoStringNCTools:::.apply(...)
 5.       └─Biobase::multiassign(names(.kvs), .kvs, environment(FUN))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GeomxTools_RNA-NGS_Analysis.Rmd' failed with diagnostics:
envir argument is not an environment
--- failed re-building ‘GeomxTools_RNA-NGS_Analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘GeomxTools_RNA-NGS_Analysis.Rmd’

Error: Vignette re-building failed.
Execution halted