############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scATAC.Explorer ### ############################################################################## ############################################################################## * checking for file ‘scATAC.Explorer/DESCRIPTION’ ... OK * preparing ‘scATAC.Explorer’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘scATAC.Explorer.Rmd’ using rmarkdown Quitting from scATAC.Explorer.Rmd:119-121 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'as.matrix': error in evaluating the argument 'object' in selecting a method for function 'counts': subscript out of bounds --- Backtrace: ▆ 1. ├─knitr::kable(data.frame(as.matrix(counts(res[[1]][1:10, 1:8])))) 2. ├─base::data.frame(as.matrix(counts(res[[1]][1:10, 1:8]))) 3. ├─base::as.matrix(counts(res[[1]][1:10, 1:8])) 4. ├─BiocGenerics::counts(res[[1]][1:10, 1:8]) 5. ├─base (local) ``(``) 6. └─base::.handleSimpleError(...) 7. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'scATAC.Explorer.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': error in evaluating the argument 'object' in selecting a method for function 'counts': subscript out of bounds --- failed re-building ‘scATAC.Explorer.Rmd’ SUMMARY: processing the following file failed: ‘scATAC.Explorer.Rmd’ Error: Vignette re-building failed. Execution halted