############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TMExplorer ### ############################################################################## ############################################################################## * checking for file ‘TMExplorer/DESCRIPTION’ ... OK * preparing ‘TMExplorer’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘TMExplorer.Rmd’ using rmarkdown Quitting from TMExplorer.Rmd:89-91 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Error while performing HEAD request --- Backtrace: ▆ 1. ├─TMExplorer::queryTME(geo_accession = "GSE81861") 2. │ └─TMExplorer:::fetchTME(df, row, sparse) 3. │ └─TMExplorer:::downloadTME(df, row, "expression_link", bfc) 4. │ ├─BiocFileCache::bfcadd(...) 5. │ └─BiocFileCache::bfcadd(...) 6. │ └─BiocFileCache:::.util_download(...) 7. │ └─BiocFileCache:::.util_set_cache_info(bfc, rid[ok]) 8. │ └─BiocFileCache:::.httr_get_cache_info(fpath) 9. │ ├─base::withCallingHandlers(...) 10. │ └─request(link) %>% req_method("HEAD") %>% req_perform() 11. ├─httr2::req_perform(.) 12. │ └─httr2:::handle_resp(req, resp, error_call = error_call) 13. │ └─rlang::cnd_signal(cnd) 14. │ └─rlang:::signal_abort(cnd) 15. │ └─base::signalCondition(cnd) 16. └─BiocFileCache (local) ``(``) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'TMExplorer.Rmd' failed with diagnostics: Error while performing HEAD request --- failed re-building ‘TMExplorer.Rmd’ SUMMARY: processing the following file failed: ‘TMExplorer.Rmd’ Error: Vignette re-building failed. Execution halted