############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOSemSim ### ############################################################################## ############################################################################## * checking for file ‘GOSemSim/DESCRIPTION’ ... OK * preparing ‘GOSemSim’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘GOSemSim’ ... ** using staged installation ** libs g++ -std=gnu++14 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c ICmethod.cpp -o ICmethod.o ICmethod.cpp: In function ‘Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)’: ICmethod.cpp:82:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 82 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:88:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 88 | for (std::size_t i=0; i < ic_.size(); i++ ) { | ~~^~~~~~~~~~~~ ICmethod.cpp:118:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 118 | for (std::size_t i=0; i < anc_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:131:30: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 131 | for ( std::size_t i = 0; i < id1_.size(); i++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 138 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ ICmethod.cpp:165:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 165 | for ( std::size_t j = 0; j < id2_.size(); j++ ) { | ~~^~~~~~~~~~~~~ g++ -std=gnu++14 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o GOSemSim.so ICmethod.o RcppExports.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR installing to /tmp/Rtmpz2mEbz/Rinst14f3b46fc2d7e2/00LOCK-GOSemSim/00new/GOSemSim/libs ** R Error in parse(outFile) : /tmp/Rtmpz2mEbz/Rbuild14f3b45c2c2c2a/GOSemSim/R/buildGOmap.R:33:35: unexpected input 32: return(d) 33: }) |> do.call('rbind', args = _ ^ ERROR: unable to collate and parse R files for package ‘GOSemSim’ * removing ‘/tmp/Rtmpz2mEbz/Rinst14f3b46fc2d7e2/GOSemSim’ ----------------------------------- ERROR: package installation failed