Package Download_score org.Sc.sgd.db 569 human.db0 117 BSgenome.Mmusculus.UCSC.mm9 260 drosgenome1probe 41 hgu133atagprobe 56 hgu133plus2cdf 737 pd.ragene.1.0.st.v1 60 pd.mapping50k.xba240 173 org.Rn.eg.db 1660 hgu95bcdf 43 ath1121501cdf 65 org.Xl.eg.db 296 mgu74av2cdf 47 hom.At.inp.db 29 pd.porgene.1.1.st 40 mgu74bv2.db 52 u133aaofav2cdf 44 IlluminaHumanMethylation27k.db 52 chickenprobe 44 lumiRatV1 2 BSgenome.Tgondii.ToxoDB.7.0 49 hgu133a2.db 219 mouseCHRLOC 33 hu35ksubccdf 40 pd.hugene.1.1.st.v1 91 pd.rcngene.1.1.st 38 pd.hugene.1.0.st.v1 239 drosgenome1.db 64 IlluminaHumanMethylation450kmanifest 1241 TxDb.Scerevisiae.UCSC.sacCer3.sgdGene 84 agprobe 43 canine2cdf 42 anopheles.db0 63 porcine.db 51 hguatlas13k.db 54 mogene10sttranscriptcluster.db 110 rgu34c.db 52 pd.mg.u74bv2 38 porcinecdf 42 BSgenome.Scerevisiae.UCSC.sacCer2 210 mgu74av2.db 61 human650v3aCrlmm 34 r10kcod.db 46 org.Sco.eg.db 27 rtu34probe 44 hgu133afrmavecs 55 moe430a.db 62 hom.Ce.inp.db 31 hgu95c.db 55 hugene10stv1probe 49 mu19ksubbcdf 37 FDb.FANTOM4.promoters.hg19 35 barley1cdf 44 bovine.db0 71 drosophila2cdf 43 pd.ecoli 39 pd.hg.u133a 84 mpedbarray.db 55 hthgu133acdf 52 mouse430a2cdf 49 hom.Hs.inp.db 45 hugene11stprobeset.db 57 pd.aragene.1.1.st 43 RmiR.Hs.miRNA 47 moe430acdf 45 BSgenome.Scerevisiae.UCSC.sacCer3 151 mirna102xgaincdf 35 BSgenome.Drerio.UCSC.danRer7 246 lumiMouseAll.db 48 TxDb.Mmusculus.UCSC.mm9.knownGene 526 illuminaHumanv2.db 81 mogene20sttranscriptcluster.db 58 hgug4845a.db 37 rhesusprobe 42 drosgenome1cdf 41 mgu74bv2probe 40 pd.medicago 37 RnAgilentDesign028282.db 53 pd.chicken 37 TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts 104 pd.cangene.1.0.st 40 pd.e.coli.2 42 gahgu133bcdf 22 pd.bovgene.1.1.st 76 BSgenome.Athaliana.TAIR.TAIR9 87 maizecdf 39 bovineprobe 48 celeganscdf 43 genomewidesnp5Crlmm 155 hgu219probe 37 SIFT.Hsapiens.dbSNP132 78 pd.moex.1.0.st.v1 58 rgu34a.db 59 poplarcdf 42 pd.tomato 39 h10kcod.db 47 rae230bcdf 41 ragene10stprobeset.db 51 rtu34cdf 40 BSgenome.Gaculeatus.UCSC.gasAcu1 41 ye6100subbcdf 39 hthgu133afrmavecs 26 rae230a.db 95 pd.zebgene.1.0.st 36 illuminaMousev2.db 64 pd.bsubtilis 42 pd.canine.2 39 pd.mirna.3.1 34 yeast2probe 45 mgu74ccdf 40 pd.u133.x3p 47 OperonHumanV3.db 52 hom.Sc.inp.db 34 rae230acdf 43 mgu74bcdf 42 ecolicdf 61 pd.vitis.vinifera 39 hthgu133a.db 110 mgu74a.db 54 pd.2006.07.18.hg18.refseq.promoter 41 ye6100subccdf 39 hgu219cdf 71 medicagocdf 41 pd.hg.u133a.tag 40 mgug4104a.db 48 bsubtiliscdf 38 TxDb.Hsapiens.UCSC.hg18.knownGene 500 gahgu133aprobe 28 gahgu133bprobe 27 mu11ksuba.db 51 gahgu95av2.db 26 pd.zebgene.1.1.st 41 nugohs1a520180probe 37 xtropicalisprobe 41 SNPlocs.Hsapiens.dbSNP.20111119 32 hcg110.db 55 hgu95cprobe 44 hgu95bprobe 42 mogene10stprobeset.db 58 mouse4302frmavecs 52 TxDb.Rnorvegicus.UCSC.rn4.ensGene 261 RmiR.hsa 42 ye6100subdcdf 40 hu6800probe 45 pd.porgene.1.0.st 40 mu19ksubacdf 39 rhesus.db0 69 SNPlocs.Hsapiens.dbSNP.20101109 39 pd.mogene.2.1.st 49 FDb.InfiniumMethylation.hg19 1390 targetscan.Hs.eg.db 112 plasmodiumanophelescdf 51 BSgenome.Hsapiens.UCSC.hg17 57 BSgenome.Btaurus.UCSC.bosTau3 54 htmg430aprobe 47 pd.hg.u133a.2 54 pd.mapping50k.hind240 167 paeg1acdf 39 pedbarrayv10.db 54 mgu74cv2.db 57 xlaevis.db 53 hu35ksubc.db 53 pd.hg.u95av2 81 HuO22.db 51 pd.bovgene.1.0.st 39 gahgu95bcdf 23 hcg110cdf 40 vitisviniferacdf 42 mirna10probe 38 pd.ovigene.1.0.st 38 BSgenome.Osativa.MSU.MSU7 89 Rattus.norvegicus 62 pd.hg.u95e 42 xlaevis2probe 36 ragene20stprobeset.db 45 gahgu95eprobe 27 HuExExonProbesetLocationHg19 38 human1mv1cCrlmm 33 hgu95b.db 56 TxDb.Celegans.UCSC.ce6.ensGene 260 Mu22v3.db 52 SNPlocs.Hsapiens.dbSNP.20071016 5 BSgenome.Drerio.UCSC.danRer7.masked 29 BSgenome.Rnorvegicus.UCSC.rn5.masked 39 BSgenome.Rnorvegicus.UCSC.rn4.masked 34 BSgenome.Mmulatta.UCSC.rheMac2.masked 32 BSgenome.Mmusculus.UCSC.mm8.masked 74 BSgenome.Dmelanogaster.UCSC.dm2.masked 27 BSgenome.Gaculeatus.UCSC.gasAcu1.masked 29 BSgenome.Ggallus.UCSC.galGal3.masked 28 BSgenome.Mmusculus.UCSC.mm9.masked 49 hugene10st.db 2 BSgenome.Mmusculus.UCSC.mm10.masked 67 gahgu95av2 2 gahgu133plus2 3 gahgu133a 3 MeSH.db 25 org.MeSH.Hsa.db 6 org.MeSH.Sau.RF122.db 5 org.MeSH.Ocu.db 5 huex10stprobeset.db 40 org.MeSH.Sau.N315.db 6 pd.nugo.mm1a520177 29 org.MeSH.Ddi.AX4.db 5 org.MeSH.Lma.db 6 org.MeSH.Sau.MRSA252.db 5 org.MeSH.Laf.db 5 org.MeSH.Cal.SC5314.db 5 org.MeSH.Eco.O157.H7.TW14359.db 4 org.MeSH.Tbr.9274.db 6 org.MeSH.Ana.db 6 org.MeSH.Eco.SE11.db 5 org.MeSH.Dsi.db 4 org.MeSH.Bsu.RONN1.db 5 org.MeSH.Cja.db 6 org.MeSH.Aga.PEST.db 5 org.MeSH.Pfa.3D7.db 5 org.MeSH.Sau.ED98.db 6 org.MeSH.Sau.USA300FPR3757.db 5 org.MeSH.Pae.PAO1.db 6 org.MeSH.Dgr.db 5 org.MeSH.Cel.db 6 org.MeSH.Sau.M013.db 5 org.MeSH.Eco.O157.H7.Sakai.db 5 org.MeSH.Eco.APEC01.db 4 org.MeSH.Eco.UMN026.db 4 org.MeSH.Eco.K12.MG1655.db 4 org.MeSH.Dvi.db 6 MafDb.ALL.wgs.phase1.release.v3.20101123 17 dmdrosophila2dmrefseq 2 BSgenome.Mfuro.UCSC.musFur1 31 illuminaHumanv1 2 hsfocushsentrezgcdf 2 hs133pptense7cdf 1 hs95av2ptensg7cdf 1 hs95av2ptensg7probe 1 u133x3p 3 hsex10stv2ptensg7cdf 2 pd.drogene.1.0.st 31 pd.rabgene.1.1.st 29 pd.hta.2.0 111 pd.chogene.2.0.st 32 pd.rcngene.1.0.st 27 pd.soygene.1.0.st 30 pd.guigene.1.1.st 33 pd.rusgene.1.0.st 27 pd.chogene.2.1.st 28 pd.rjpgene.1.0.st 30 SNPlocs.Hsapiens.dbSNP141.GRCh38 19 mta10sttranscriptcluster.db 13 mouse4302 4 hwgcod 4 lumiHumanV1 2 dmdrosophila2dmensg7probe 1 illuminaMousev1p1 2 hs133phsenst7probe 1 hs133xptensg7cdf 1 hs133xhsense7probe 1 rae230a 4 hs133phsentrezgcdf 2 hs133pptensg7cdf 1 hs133phsug7probe 1 hs133bhsense7probe 2 hs133bptense7probe 1 mm430mmense 3 mgu74av2 5 canine2probe 45 org.Gg.eg.db 429 hgu95av2.db 731 pd.hg.u133b 43 oligoData 88 KEGG.db 285 canine2.db 56 mouse4302cdf 124 TxDb.Scerevisiae.UCSC.sacCer2.sgdGene 37 hgu133b.db 77 hu6800subbcdf 38 BSgenome.Hsapiens.UCSC.hg19 2514 yeast2.db 65 org.Dr.eg.db 853 org.Mm.eg.db 8551 BSgenome.Celegans.UCSC.ce2 335 h20kcod.db 44 org.Cf.eg.db 435 pd.soybean 44 SNPlocs.Hsapiens.dbSNP.20100427 31 hgu133a2frmavecs 26 org.Bt.eg.db 463 hgu133acdf 226 pd.aragene.1.0.st 38 pd.mouse430a.2 42 mu11ksubbprobe 43 pd.yg.s98 39 BSgenome.Dmelanogaster.UCSC.dm3 240 worm.db0 68 drosophila2.db 56 moe430bprobe 43 BSgenome.Hsapiens.UCSC.hg18 252 hu35ksubaprobe 43 pd.rg.u34b 36 rgu34b.db 53 org.Ce.eg.db 542 BSgenome.Drerio.UCSC.danRer6 41 soybeancdf 107 BSgenome.Dmelanogaster.UCSC.dm2 63 hu6800subdcdf 39 IlluminaHumanMethylation450kanno.ilmn12.hg19 1467 hugene20sttranscriptcluster.db 84 hgu133aprobe 166 mogene11sttranscriptcluster.db 57 ygs98.db 56 BSgenome.Btaurus.UCSC.bosTau6 51 illuminaHumanv4.db 315 mguatlas5k.db 52 pd.ecoli.asv2 39 humanomni5quadv1bCrlmm 26 drosophila2probe 170 hgubeta7.db 54 pd.plasmodium.anopheles 38 pd.drosgenome1 40 pd.xenopus.laevis 40 canine.db 51 pd.wheat 46 pd.mg.u74b 36 hthgu133b.db 51 ath1121501probe 47 htmg430acdf 44 canineprobe 42 pd.rjpgene.1.1.st 35 BSgenome.Cfamiliaris.UCSC.canFam2 45 org.EcK12.eg.db 365 hgug4112a.db 93 pd.hu6800 58 porcineprobe 46 hgu133a2probe 52 mogene.1.0.st.v1frmavecs 23 hugene10stprobeset.db 62 hgfocuscdf 65 rhesuscdf 43 hugene11sttranscriptcluster.db 89 mgug4121a.db 55 pd.hg.u133.plus.2 228 pd.drosophila.2 39 wheatcdf 43 ragene10stv1cdf 37 gahgu133plus2probe 27 gahgu95bprobe 28 pd.hc.g110 37 hu6800subacdf 37 mu19ksubccdf 39 poplarprobe 42 pd.barley1 40 mgu74bv2cdf 41 mgu74acdf 42 rnu34probe 40 hgfocus.db 80 pd.mapping250k.nsp 163 gahgu133plus2cdf 31 bovinecdf 46 pd.sugar.cane 38 hi16cod.db 42 ragene21stprobeset.db 42 hom.Dr.inp.db 29 ecoliasv2probe 44 pd.cytogenetics.array 49 pd.cyngene.1.0.st 40 huex.1.0.st.v2frmavecs 33 hugene.1.0.st.v1frmavecs 29 tomatoprobe 42 pd.rhesus 44 mu6500subacdf 39 tomatocdf 38 pd.rice 61 pd.hg18.60mer.expr 67 plasmodiumanophelesprobe 40 hu35ksubbprobe 41 ygs98cdf 45 ecoli2cdf 41 ratCHRLOC 34 org.Ag.eg.db 240 pd.ovigene.1.1.st 43 pd.rhegene.1.1.st 39 pd.charm.hg18.example 41 mirna20cdf 39 pd.soygene.1.1.st 48 TxDb.Athaliana.BioMart.plantsmart16 8 pd.rg.u34a 41 org.Tgondii.eg.db 24 illuminaMousev1p1.db 44 gahgu133plus2.db 28 hgu219.db 113 hgu95dprobe 42 pd.mg.u74c 36 mu11ksubb.db 52 HsAgilentDesign026652.db 88 pd.celegans 42 BSgenome.Ptroglodytes.UCSC.panTro2 44 pd.hg.focus 41 pd.2006.07.18.mm8.refseq.promoter 40 pd.pae.g1a 39 mu11ksubaprobe 45 bsubtilisprobe 45 Roberts2005Annotation.db 51 moe430bcdf 41 m20kcod.db 41 citrusprobe 42 gahgu133a.db 30 rnu34.db 53 HuExExonProbesetLocation 37 lumiMouseIDMapping 44 TxDb.Mmusculus.UCSC.mm10.knownGene 1323 pd.zebrafish 40 adme16cod.db 48 pd.mouse430.2 74 BSgenome.Scerevisiae.UCSC.sacCer1 93 mogene21sttranscriptcluster.db 57 human370quadv3cCrlmm 35 rgug4131a.db 51 BSgenome.Drerio.UCSC.danRer5 42 hom.Dm.inp.db 34 mogene20stprobeset.db 42 htratfocusprobe 43 mu19ksuba.db 48 JazaeriMetaData.db 54 mogene21stprobeset.db 46 chimp.db0 67 IlluminaHumanMethylation27kmanifest 46 nugohs1a520180cdf 39 ragene20sttranscriptcluster.db 46 illuminaMousev1p1BeadID.db 7 hugene21stprobeset.db 49 ygs98frmavecs 26 FDb.UCSC.snp137common.hg19 39 BSgenome.Rnorvegicus.UCSC.rn4 60 mouse430a2frmavecs 25 htmg430pmprobe 41 hgug4111a.db 55 pd.ragene.1.1.st.v1 46 hom.Rn.inp.db 36 pd.hg.u95b 38 pd.ht.mg.430a 40 gahgu95cprobe 29 humancytosnp12v2p1hCrlmm 27 hwgcod.db 43 hthgu133bprobe 44 domainsignatures 0 BSgenome.Mmulatta.UCSC.rheMac3.masked 34 SIFT.Hsapiens.dbSNP137 88 gmahomology 3 BSgenome.Sscrofa.UCSC.susScr3 35 illuminaRatv1BeadID.db 6 illuminaMousev2BeadID.db 10 BSgenome.Ptroglodytes.UCSC.panTro2.masked 30 gahgu95d 2 org.MeSH.Bsu.168.db 6 MeSH.PCR.db 23 org.MeSH.Syn.db 6 org.MeSH.Atu.K84.db 6 MeSH.AOR.db 24 org.MeSH.Ptr.db 5 org.MeSH.Der.db 5 org.MeSH.Bsu.TUB10.db 5 mm74av1mmentrezgprobe 2 org.MeSH.Cin.db 6 huex10sttranscriptcluster.db 58 org.MeSH.Eco.55989.db 5 org.MeSH.Dda.3937.db 5 TxDb.Athaliana.BioMart.plantsmart21 3 org.MeSH.Eqc.db 5 org.MeSH.Pae.PA14.db 5 org.MeSH.Rno.db 5 org.MeSH.Gma.db 5 org.MeSH.Sau.COL.db 5 org.MeSH.Cfa.db 5 org.MeSH.Bta.db 6 org.MeSH.Bsu.Bsn5.db 5 org.MeSH.Cbr.db 5 org.MeSH.Miy.db 6 org.MeSH.Eco.536.db 4 org.MeSH.Ani.FGSC.db 5 org.MeSH.Eco.SMS35.db 5 org.MeSH.Eco.E24377A.db 6 org.MeSH.Mml.db 4 org.MeSH.Mtr.db 5 org.MeSH.Mmu.db 5 org.MeSH.Dya.db 5 raex10stprobeset.db 45 MafDb.ESP6500SI.V2.SSA137.dbSNP138 6 phastCons100way.UCSC.hg19 192 humanomni258v1aCrlmm 2 hsahomology 4 xlahomology 5 SNPlocs.Hsapiens.dbSNP.20080617 7 hs133av2ptensg7cdf 1 hguatlas13k 4 cfcanine2cfense7cdf 1 TxDb.Hsapiens.UCSC.hg38.knownGene 2407 pd.elegene.1.1.st 30 pd.elegene.1.0.st 31 pd.guigene.1.0.st 29 pd.chigene.1.1.st 33 pd.rusgene.1.1.st 33 ChemmineDrugs 57 mta10stprobeset.db 13 XtraSNPlocs.Hsapiens.dbSNP141.GRCh38 19 mogene10stv1.r3cdf 1 illuminaHumanv4BeadID.db 3 hs95av2hsentrezgcdf 3 drosophila2 3 hs133xhsrefseq7probe 1 yeast2 4 btahomology 4 BSgenome.Hsapiens.NCBI.b36v3 2 hu6800 4 ath1attair 3 hgu133b 4 m20kcod 5 hs133bhsrefseq7cdf 1 hs133bptensg7cdf 1 ragene10stv1.r3cdf 1 hs133av2hsentrezg 2 hgu95ecdf 41 hu6800.db 223 GO.db 24225 hgu133a.db 824 org.Hs.eg.db 20380 hgu95aprobe 45 hgu133plus2.db 1871 chickencdf 42 htmg430pmcdf 42 moe430aprobe 43 lumiRatAll.db 44 pd.mg.u74av2 40 ath1121501.db 80 barley1probe 43 pd.hugene.2.1.st 134 mirbase.db 169 sugarcanecdf 38 sugarcaneprobe 42 arabidopsis.db0 74 Mus.musculus 292 IlluminaHumanMethylation450k.db 36 pd.mogene.1.1.st.v1 63 mgu74cv2cdf 38 hugene10stv1cdf 129 chicken.db0 74 mu6500subdcdf 39 pd.rae230b 39 pd.hg.u95c 37 mgu74cprobe 42 illuminaHumanWGDASLv3.db 37 org.At.tair.db 815 pd.mirna.3.0 38 hgu95a.db 658 hu35ksubacdf 39 u133x3pcdf 44 lumiHumanIDMapping 107 hgu95av2 93 pd.yeast.2 38 mouse4302.db 210 gahgu133acdf 25 hthgu133aprobe 44 org.Dm.eg.db 998 mgu74cv2probe 42 u133x3pprobe 42 pd.canine 39 org.Ss.eg.db 464 hu35ksubcprobe 43 lumiHumanAll.db 84 pd.s.aureus 39 ye6100subacdf 39 SNPlocs.Hsapiens.dbSNP.20110815 25 cyp450cdf 38 gahgu95ecdf 23 pd.hg.u95d 40 rgu34bcdf 39 targetscan.Mm.eg.db 45 rtu34.db 51 htmg430bprobe 40 caninecdf 42 pd.hg.u219 55 nugomm1a520177.db 40 BSgenome.Celegans.UCSC.ce10 72 rgu34bprobe 43 pd.mu11ksubb 39 pd.poplar 38 hgu133bcdf 66 hgu133a2cdf 131 hgu95dcdf 40 mogene11stprobeset.db 54 vitisviniferaprobe 44 org.Mmu.eg.db 469 org.EcSakai.eg.db 241 BSgenome.Athaliana.TAIR.04232008 47 pd.huex.1.0.st.v2 130 primeviewprobe 38 paeg1aprobe 40 illuminaHumanv1.db 67 pd.maize 38 illuminaHumanWGDASLv4.db 40 TxDb.Dmelanogaster.UCSC.dm3.ensGene 510 illuminaMousev1.db 45 Homo.sapiens 852 hgug4101a.db 52 rnu34cdf 42 wheatprobe 41 rgu34aprobe 41 ragene11stprobeset.db 50 pd.bovine 45 mgu74b.db 56 pd.x.tropicalis 41 pd.mirna.1.0 37 pd.mu11ksuba 39 BSgenome.Mmusculus.UCSC.mm8 86 mwgcod.db 47 hugene21sttranscriptcluster.db 55 saureusprobe 45 canine.db0 69 mirna10cdf 47 pd.ht.hg.u133a 44 pd.citrus 43 pd.raex.1.0.st.v1 46 zebrafish.db0 64 hs25kresogen.db 44 human1mduov3bCrlmm 34 u133x3p.db 63 TxDb.Athaliana.BioMart.plantsmart19 6 BSgenome.Ggallus.UCSC.galGal3 59 maizeprobe 43 pd.feinberg.mm8.me.hx1 41 IlluminaHumanMethylation450kprobe 42 hgug4110b.db 57 mogene10stv1cdf 65 hu35ksubdprobe 43 test2cdf 40 zebrafishprobe 46 humanCHRLOC 72 mouse430a2probe 43 pd.rn.u34 36 xenopuslaeviscdf 42 moe430b.db 54 hgfocusprobe 65 pd.moe430a 44 rae230bprobe 47 cottoncdf 41 humanomni1quadv1bCrlmm 31 indac.db 52 BSgenome.Cfamiliaris.UCSC.canFam3 65 mu6500subbcdf 42 ragene21sttranscriptcluster.db 44 rguatlas4k.db 50 pd.felgene.1.0.st 37 pd.porcine 42 mu6500subccdf 39 POCRCannotation.db 53 pd.ragene.2.1.st 38 rgug4105a.db 52 ri16cod.db 48 illuminaRatv1.db 46 pd.cyrgene.1.1.st 38 org.Hs.ipi.db 32 lumiRatIDMapping 41 genomewidesnp6Crlmm 174 BSgenome.Ggallus.UCSC.galGal4 38 ecoli2probe 40 humanLLMappings 3 ath1121501 4 pd.hugene.2.0.st 103 BSgenome.Athaliana.TAIR.01222004 10 Hs6UG171.db 52 IlluminaHumanMethylation450kannotation.ilmn.v1.2 5 BSgenome.Ptroglodytes.UCSC.panTro3 36 nugohs1a520180.db 41 mu19ksubc.db 52 gahgu95b.db 26 ecoli2.db 52 gahgu95c.db 27 hthgu133bcdf 42 LAPOINTE.db 52 hguqiagenv3.db 54 gahgu95d.db 26 hu35ksuba.db 53 human550v3bCrlmm 31 pd.mg.u74cv2 38 rae230b.db 53 TxDb.Athaliana.BioMart.plantsmart12 10 chicken.db 52 xlaevis2cdf 37 human660quadv1aCrlmm 31 gahgu133b.db 28 BSgenome.Hsapiens.UCSC.hg19.masked 145 hgu95e.db 53 ecoliSakai.db0 66 rat.db0 71 KEGGprofile 0 cottonprobe 44 BSgenome.Drerio.UCSC.danRer6.masked 28 BSgenome.Drerio.UCSC.danRer5.masked 29 BSgenome.Cfamiliaris.UCSC.canFam2.masked 30 hgu133plus2 4 BSgenome.Hsapiens.UCSC.hg18.masked 48 hgu95a 4 BSgenome.Sscrofa.UCSC.susScr3.masked 32 hgu133a2 3 BSgenome.Hsapiens.NCBI.GRCh38 613 BSgenome.Dmelanogaster.UCSC.dm3.masked 31 BSgenome.Hsapiens.UCSC.hg17.masked 40 BSgenome.Ptroglodytes.UCSC.panTro3.masked 27 BSgenome.Btaurus.UCSC.bosTau4.masked 30 Masks.Dmelanogaster.UCSC.dm3 8 gahgu133b 2 gahgu95b 2 gahgu95c 2 KEGG 4 org.MeSH.Sau.MSHR1132.db 5 moex10sttranscriptcluster.db 42 org.MeSH.Xla.db 6 org.MeSH.Cpo.db 6 org.MeSH.Spo.972h.db 5 org.MeSH.Sau.Mu50.db 5 org.MeSH.Cre.db 5 org.MeSH.Sil.db 5 org.MeSH.Dre.db 5 org.MeSH.Sau.MSSA476.db 5 org.MeSH.Ssc.db 5 org.MeSH.Sau.Mu3.db 5 org.MeSH.Sce.S288c.db 5 org.MeSH.Eco.ED1a.db 5 org.MeSH.Eco.IAI1.db 5 org.MeSH.Eco.S88.db 5 org.MeSH.Sco.A32.db 5 org.MeSH.Xtr.db 5 org.MeSH.Eco.B.REL606.db 6 org.MeSH.Pae.LESB58.db 6 org.MeSH.Mga.db 5 org.MeSH.Eco.O111.H.11128.db 5 org.MeSH.Dme.db 4 org.MeSH.Dpe.db 4 org.MeSH.Eco.CFT073.db 5 org.MeSH.Nle.db 5 org.MeSH.Bsu.W23.db 5 org.MeSH.Eco.O103.H2.12009.db 5 org.MeSH.Mes.db 5 org.MeSH.Ath.db 5 org.MeSH.Eco.KO11FL.db 5 org.MeSH.Gga.db 4 org.MeSH.Sau.VC40.db 5 org.MeSH.Eco.O127.H6.E2348.69.db 5 org.MeSH.Dse.db 5 org.MeSH.Aml.db 6 org.MeSH.Eco.IAI39.db 5 org.MeSH.Sau.Newman.db 5 org.MeSH.Oan.db 6 org.MeSH.Eco.BW2952.db 5 org.MeSH.Pto.db 6 org.MeSH.Mdo.db 5 illuminaMousev1 2 miRNAtap.db 97 hvuhomology 4 hgu95e 4 atgenomeattigr7probe 1 hs133aptense7probe 1 celegans 3 TxDb.Athaliana.BioMart.plantsmart22 159 pd.fingene.1.0.st 33 pd.margene.1.1.st 28 pd.mirna.4.0 44 pd.drogene.1.1.st 28 TxDb.Hsapiens.BioMart.igis 29 mgug4122a 4 illuminaHumanv3ProbeID.db 2 rat2302 5 BSgenome.Dmelanogaster.FlyBase.r51 2 lumiHumanV2 3 hs133ahsensgcdf 3 hs133bptensg7probe 1 atgenomeattigr7cdf 1 hs133bhsense7cdf 1 dmgenome1dmrefseq7probe 1 TxDb.Mmusculus.BioMart.igis 0 TxDb.Scerevisiae.UCSC.sacCer2.ensGene 1 cfcanine2cfensg7cdf 1 hs95av2hsense 2 reactome.db 3589 pd.cyrgene.1.0.st 40 pd.cangene.1.1.st 40 hgu95acdf 146 TxDb.Hsapiens.UCSC.hg19.knownGene 4605 hgu133plus2probe 125 hugene10sttranscriptcluster.db 574 pd.rae230a 39 PFAM.db 572 rat2302probe 45 pd.rhegene.1.0.st 56 rattoxfxcdf 34 cMAP 62 illuminaHumanv3.db 243 primeviewcdf 79 hgu95eprobe 42 DO.db 1353 medicagoprobe 44 htrat230pmcdf 40 mu11ksubacdf 40 mu11ksubbcdf 41 SNPlocs.Hsapiens.dbSNP.20090506 31 ag.db 60 hgu95av2cdf 372 pd.ragene.2.0.st 42 rwgcod.db 43 hu35ksubb.db 51 hgu95av2probe 323 pd.felgene.1.1.st 40 MoExExonProbesetLocation 39 hom.Mm.inp.db 35 TxDb.Athaliana.BioMart.plantsmart14 7 pd.ath1.121501 42 mouse4302probe 49 pd.081229.hg18.promoter.medip.hx1 38 rae230aprobe 86 BSgenome.Ecoli.NCBI.20080805 136 pd.mirna.2.0 38 mouse.db0 82 pd.mogene.2.0.st 92 seqnames.db 12 MmAgilentDesign026655.db 53 Norway981.db 51 yeast2cdf 46 pd.2006.10.31.rn34.refseq.promoter 37 BSgenome.Btaurus.UCSC.bosTau4 48 nugomm1a520177probe 39 bovine.db 55 ricecdf 49 htratfocuscdf 40 ecoliprobe 41 celegans.db 76 FDb.UCSC.snp135common.hg19 39 BSgenome.Amellifera.BeeBase.assembly4 44 hu35ksubdcdf 40 gahgu95av2cdf 25 hgu95ccdf 43 mouse430a2.db 86 hugene20stprobeset.db 50 riceprobe 48 hu35ksubbcdf 41 BSgenome.Celegans.UCSC.ce6 56 PartheenMetaData.db 55 FDb.UCSC.tRNAs 99 hguDKFZ31.db 52 GGHumanMethCancerPanelv1.db 39 org.Pt.eg.db 274 test3cdf 45 xenopus.db0 63 hu6800subccdf 38 pd.ag 43 agcdf 42 test3probe 41 hu6800cdf 43 mgu74av2probe 41 xenopuslaevisprobe 43 ecoliasv2cdf 40 hivprtplus2cdf 39 org.Pf.plasmo.db 135 zebrafishcdf 48 ygs98probe 42 rgu34cprobe 43 mgu74c.db 53 hcg110probe 40 mi16cod.db 43 malaria.db0 64 hgu133plus2frmavecs 46 rgu34ccdf 39 rgu34acdf 45 PANTHER.db 193 BSgenome.Amellifera.UCSC.apiMel2 44 hgu133atagcdf 61 PolyPhen.Hsapiens.dbSNP131 101 pd.cotton 37 htmg430bcdf 38 pd.mogene.1.0.st.v1 98 ragene10stv1probe 40 mgu74aprobe 42 mgu74bprobe 43 saureuscdf 39 BSgenome.Mmulatta.UCSC.rheMac2 38 TxDb.Athaliana.BioMart.plantsmart10 11 mogene10stv1probe 40 celegansprobe 45 pd.genomewidesnp.5 170 xtropicaliscdf 38 TxDb.Mmusculus.UCSC.mm10.ensGene 125 gahgu95av2probe 29 BSgenome.Alyrata.JGI.v1 47 illuminaHumanv2BeadID.db 44 RaExExonProbesetLocation 43 citruscdf 41 hgu133bprobe 49 pd.equgene.1.1.st 43 pd.rg.u34c 38 pd.equgene.1.0.st 38 pig.db0 69 BSgenome.Mmusculus.UCSC.mm10 1182 test1cdf 38 pd.genomewidesnp.6 210 gahgu95e.db 26 pd.feinberg.hg18.me.hx1 43 soybeanprobe 40 SHDZ.db 53 rat2302cdf 59 TxDb.Rnorvegicus.UCSC.rn5.refGene 94 rat2302.db 87 fly.db0 67 rattoxfxprobe 37 yeast.db0 71 pd.cyngene.1.1.st 37 gahgu95ccdf 23 SNPlocs.Hsapiens.dbSNP.20120608 37 athhomology 4 ragene10sttranscriptcluster.db 51 pd.rat230.2 58 YEAST 4 hthgu133pluspmcdf 57 pd.mapping250k.sty 159 FDb.InfiniumMethylation.hg18 65 BSgenome.Rnorvegicus.UCSC.rn5 83 hgu95d.db 59 human610quadv1bCrlmm 59 nugomm1a520177cdf 35 pd.hg.u95a 90 pd.ht.hg.u133.plus.pm 50 mu19ksubb.db 52 humanomni25quadv1bCrlmm 26 pedbarrayv9.db 51 ecoliK12.db0 69 mgug4122a.db 55 BSgenome.Mmulatta.UCSC.rheMac3 35 ragene11sttranscriptcluster.db 54 hthgu133pluspmprobe 42 gahgu95dprobe 29 hu35ksubd.db 53 rgug4130a.db 54 pd.mg.u74a 38 pd.moe430b 38 gp53cdf 40 human370v1cCrlmm 147 m10kcod.db 43 humanomniexpress12v1bCrlmm 33 gahgu95dcdf 24 mgug4120a.db 53 hgug4100a.db 55 Mu15v1.db 54 illuminaHumanDASLBeadID.db 6 zebrafish.db 54 pd.x.laevis.2 41 mm24kresogen.db 38 hapmap370k 46 HuExExonProbesetLocationHg18 35 htrat230pmprobe 40 hgu133a 4 BSgenome.Cfamiliaris.UCSC.canFam3.masked 32 BSgenome.Ggallus.UCSC.galGal4.masked 29 org.Rn.sp.db 4 rwgcod 4 BSgenome.Amellifera.UCSC.apiMel2.masked 31 BSgenome.Btaurus.UCSC.bosTau3.masked 34 BSgenome.Btaurus.UCSC.bosTau6.masked 46 illuminaHumanv3BeadID.db 6 illuminaMousev1BeadID.db 5 illuminaHumanv1BeadID.db 10 BSgenome.Tguttata.UCSC.taeGut1 30 BSgenome.Tguttata.UCSC.taeGut1.masked 27 gahgu95e 3 mogene10st.db 1 GO 4 hugene10stv1.r3cdf 1 org.MeSH.Aca.db 6 org.MeSH.Eco.HS.db 6 pd.nugo.hs1a520180 31 mm74av1mmentrezgcdf 2 org.MeSH.Ame.db 5 org.MeSH.Sau.USA300TCH1516.db 5 org.MeSH.Zma.db 5 raex10sttranscriptcluster.db 45 org.MeSH.Eco.O26.H7.CB9615.db 5 org.MeSH.Bfl.db 6 org.MeSH.Eco.O157.H7.EC4115.db 5 org.MeSH.Osa.db 6 org.MeSH.Eco.UTI89.db 5 org.MeSH.Vvi.db 6 moex10stprobeset.db 44 org.MeSH.Pab.db 5 org.MeSH.Dmo.db 4 org.MeSH.Eco.O157.H7.EDL933.db 5 org.MeSH.Sau.MW2.db 5 org.MeSH.Spu.db 5 org.MeSH.Pae.PA7.db 5 org.MeSH.Dan.db 5 org.MeSH.Tgo.ME49.db 5 org.MeSH.Tgu.db 5 org.MeSH.Oni.db 5 org.MeSH.Eco.O26.H11.11368.db 5 org.MeSH.Eco.K12.DH10B.db 5 illuminaHumanv2 2 humanomni258v1p1bCrlmm 2 hs133pptense7probe 1 hs133phsentrezg7cdf 1 hs133bhsentrezg7probe 1 dmgenome1dmenst7probe 1 hs133phsrefseq7probe 1 dmdrosophila2dmense7probe 1 dmgenome1dmensg7cdf 1 dmdrosophila2dmenst7cdf 1 lumiHumanIDMapping.db 1 Hspec 26 pd.medgene.1.1.st 27 pd.margene.1.0.st 28 pd.medgene.1.0.st 31 pd.fingene.1.1.st 28 pd.rabgene.1.0.st 31 pd.chigene.1.0.st 28 hs133ahsentrezgcdf 3 TxDb.Rnorvegicus.BioMart.igis 30 hspeccdf 26 BSgenome.Rnorvegicus.UCSC.rn6 138 BSgenome.Dmelanogaster.UCSC.dm6 176 ag 4 adme16cod 4 org.Hs.sp.db 3 hs133xhsensg7probe 1 agahomology 4 ath1atrefseq 3 hs133ahsentrezg 3 hs133phsentrezg 3 hsex10stv2hsrefseq 1 hsex10stv2hsrefseqprobe 1 h20kcod 4 mouse430a2 4 hgfocus 4 hs133aptentrezgprobe 3 cfcanine2cfenst7cdf 1 lumiMouseV1 2 MeSH.Syn.eg.db 20 MeSH.Aca.eg.db 18 MeSH.Ath.eg.db 17 MeSH.Cbr.eg.db 18 MeSH.Dan.eg.db 16 MeSH.Dda.3937.eg.db 17 MeSH.Dmo.eg.db 16 MeSH.Dre.eg.db 17 MeSH.Dse.eg.db 16 MeSH.Dsi.eg.db 17 MeSH.Dvi.eg.db 18 MeSH.Eco.ED1a.eg.db 15 MeSH.Eco.IAI1.eg.db 11 MeSH.Eco.IAI39.eg.db 17 MeSH.Eco.K12.DH10B.eg.db 11 MeSH.Eco.UMN026.eg.db 17 MeSH.Eqc.eg.db 16 MeSH.Laf.eg.db 17 MeSH.Mml.eg.db 18 MeSH.Ocu.eg.db 17 MeSH.Pae.PAO1.eg.db 18 MeSH.Pfa.3D7.eg.db 16 MeSH.Pto.eg.db 16 MeSH.Sil.eg.db 16 MeSH.Spo.972h.eg.db 12 MeSH.Tbr.9274.eg.db 18 MeSH.Tgu.eg.db 17 MeSH.Xla.eg.db 18 MafDb.ESP6500SI.V2.SSA137 12 MafDb.ExAC.r0.3.sites 12 MeSH.Sau.COL.eg.db 0 MeSH.Eco.O103.H2.12009.eg.db 0 MeSH.Sau.USA300FPR3757.eg.db 0 MeSH.Eco.KO11FL.eg.db 0 MeSH.Eco.O26.H7.CB9615.eg.db 0 MeSH.Eco.E24377A.eg.db 0 MeSH.Pae.LESB58.eg.db 0 SNPlocs.Hsapiens.dbSNP142.GRCh37 20 pd.rta.1.0 58 EnsDb.Rnorvegicus.v79 107 BSgenome.Mfascicularis.NCBI.5.0 57 SNPlocs.Hsapiens.dbSNP144.GRCh38 336 xtrhomology 3 ScerevisiaeGenome.sacCer1 2 rnex10stv1rnug7cdf 1 rnex10stv1rnense7probe 1 rn34arnenst7probe 1 rn230rnense7cdf 1 rn230brnug7probe 1 rn230brnenst7cdf 1 rn34arnensg7probe 1 rn230rnrefseq7probe 1 rn230arnrefseq7cdf 1 rn230brnrefseq7probe 1 rn230rnentrezg7cdf 2 rn230rnenst7cdf 2 rguatlas4k 4 rgu34c 4 r10kcod 4 rae230b 5 hgug4100a 4 hsfocushsense 2 drzebrafishdrentrezgprobe 2 MafDb.ALL.wgs.phase3.release.v5b.20130502 11 phastCons100way.UCSC.hg38 107 mm11ksubammense7probe 1 mm11ksubammensg7cdf 2 mm11ksubbmmensg7cdf 1 mm11ksubbmmenst7probe 1 mm11ksubbmmentrezg7probe 1 mm11ksubbmmrefseq7probe 1 mm430ammenst7cdf 2 mm430ammrefseq7cdf 1 mm430bmmensg7probe 1 mm430bmmentrezg7cdf 1 mm430mmensg7cdf 2 mm430mmentrezg7cdf 1 mm74av1mmenst7probe 1 mm74av1mmrefseq7probe 2 mm74av1mmug7cdf 1 mm74av2mmenst7cdf 1 mm74av2mmense7cdf 2 mmex10stv1mmense7cdf 1 mmex10stv1mmrefseq7cdf 1 mmex10stv1mmrefseq7probe 1 mmuhomology 4 atgenomeattigr 1 atgenomeattigrprobe 1 ath1attigr 1 ath1attigrcdf 1 BSgenome.Dmelanogaster.BDGP.Release5 2 ggchickenggensg7cdf 1 ggchickenggenst7probe 1 egohomology 3 drzebrafishdrug7cdf 1 hgu95b 4 mouseLLMappings 3 mwgcod 4 PFAM 3 hs133xhsenstprobe 3 hs133xhsentrezgprobe 2 hs133xptensgprobe 2 hs95av2hsensg 3 hs95av2hsenstcdf 3 hs95av2hsentrezg 2 hs95av2hsrefseqcdf 3 hs95av2hsug 3 hs95av2ptensg 2 hs95av2ptensgcdf 3 hs95av2ptensgprobe 2 hs95av2ptenst 2 hs95av2ptenstcdf 2 hs95av2ptenstprobe 3 hsex10stv2hsensecdf 1 hsex10stv2hsensg 1 hsex10stv2hsensgcdf 1 hsex10stv2hsentrezg 1 hsex10stv2hsentrezgcdf 1 hsex10stv2hsugcdf 1 BSgenome.Mmusculus.UCSC.mm7 3 btbovinebtensg 2 btbovinebtenst 2 btbovinebtenstprobe 2 btbovinebtrefseqcdf 2 btbovinebtrefseqprobe 2 cfahomology 4 cfcanine2cfense 2 cfcanine2cfensg 2 cfcanine2cfenstprobe 2 cfcanine2cfentrezg 2 cfcanine2cfentrezgprobe 2 cfcanine2cfrefseqcdf 2 cfcanine2cfugcdf 2 cfcanine2cfugprobe 2 dmdrosophila2dmense 2 dmdrosophila2dmrefseqcdf 2 dmdrosophila2dmrefseqprobe 2 dmgenome1dmense 2 dmgenome1dmensg 2 dmgenome1dmenst 3 dmgenome1dmugcdf 2 drzebrafishdrensgprobe 2 drzebrafishdrenstprobe 2 drzebrafishdrugcdf 3 drzebrafishdrugprobe 2 ggchickenggensgcdf 2 ggchickenggensgprobe 2 ggchickenggenstcdf 2 ggchickenggentrezg 2 ggchickenggentrezgprobe 1 ggchickenggug 2 hgu95c 5 hgu95d 3 hguDKFZ31 3 hi16cod 4 hguqiagenv3 4 hs133ahsenstcdf 2 hs133ahsrefseqcdf 2 hs133ahsugprobe 3 hs133ahsvegaeprobe 1 hs133aptensgcdf 2 hs133aptentrezg 2 hs133av2hsense 2 hs133av2hsenstprobe 2 hs133av2hsenseprobe 3 hs133av2hsentrezgcdf 2 hs133av2hsug 3 hs133av2hsugprobe 2 hs133av2hsvegaeprobe 2 HsapiensGenome.hg16 1 hsex10stv2hsense7cdf 1 hsex10stv2hsenst7cdf 1 hsex10stv2hsrefseq7cdf 1 hsex10stv2hsug7cdf 2 hsfocushsense7probe 1 hsfocushsensg7probe 1 hsfocushsrefseq7cdf 1 hsfocushsrefseq7probe 1 hsfocushsug7probe 1 hsfocusptense7probe 1 indac 4 mi16cod 4 mm11ksubammentrezg 2 mm11ksubammentrezgprobe 2 mm11ksubammrefseq 2 mm11ksubammrefseqprobe 2 mm11ksubammug 2 mm11ksubbmmentrezgprobe 2 rn230arnrefseq 2 rn230brnenstcdf 2 rn230brnentrezg 3 rn230brnentrezgprobe 2 rn230brnrefseq 3 rn230rnensecdf 2 rn230rnentrezg 3 rn230rnentrezgprobe 3 rn230rnugcdf 2 rn230rnugprobe 2 rn34arnenseprobe 2 rn34arnentrezgprobe 2 rn34arnrefseq 2 rnex10stv1rnenstcdf 2 rnex10stv1rnenstprobe 1 rnex10stv1rnentrezgprobe 1 cfcanine2cfenst7probe 1 dmdrosophila2dmug7probe 1 dmgenome1dmense7cdf 1 dmgenome1dmug7cdf 1 drzebrafishdrense7probe 1 drzebrafishdrenst7cdf 1 hs133ahsenst7cdf 1 hs133ahsrefseq7probe 1 hs133ahsug7probe 1 hs133av2hsense7probe 1 hs133av2hsensg7probe 1 hs133av2hsenst7cdf 1 hs133av2hsentrezg7probe 1 hs133av2ptense7cdf 1 hs133av2ptensg7probe 1 hs133phsenst7cdf 1 hs133phsentrezg7probe 1 hs133pptensg7probe 1 hs133xhsense7cdf 1 hs133xhsenst7probe 1 hs133xhsentrezg7probe 2 hs133xhsug7probe 1 hs133xptensg7probe 1 hs95av2hsug7probe 1 hs95av2ptense7cdf 1 hs133av2ptenst 2 hs133bhsense 3 hs133bhsenseprobe 2 hs133bhsugprobe 2 hs133bptenseprobe 2 hs133bptentrezg 3 hs133phsense 2 hs133phsenseprobe 2 hs133phsrefseq 2 hs133phsrefseqprobe 2 hs133pptensecdf 3 hs133pptenseprobe 3 hs133pptensg 2 hs133pptensgprobe 3 hs133xhsenseprobe 3 rnex10stv1rnug 1 Norway981 3 mm74cv2mmvegagprobe 2 mm430bmmenseprobe 3 hsfocushsensecdf 2 hsfocusptrefseqprobe 2 mm430ammentrezgcdf 2 mm74av1mmense 3 hs95av2hsvegagprobe 1 mm74cv2mmvegat 2 mm430mmenstprobe 3 mm74bv2mmvegag 2 hs133av2ptrefseqcdf 2 mm430mmensecdf 2 mm430ammentrezg 2 mm430a2mmug 2 mm74av2mmugcdf 3 hs95av2ptrefseqprobe 2 mm430mmensg 3 mm430a2mmugcdf 2 hsfocushsvegatcdf 2 hsfocushsugcdf 2 hs133av2ptensg 3 mm430a2mmvegaeprobe 2 mm74cv2mmentrezg 2 mm74bv2mmug 3 mm430ammenst 2 mm74bv2mmrefseqprobe 2 mm430ammvegaecdf 2 mm430mmenseprobe 2 mm74bv2mmugprobe 2 hs133av2ptensgcdf 2 mm11ksubammvegatcdf 1 mm74av1mmrefseq 3 mm430mmvegae 2 mm430mmentrezgcdf 4 mm430a2mmensg 2 mm11ksubammvegag 2 mm74av2mmrefseqprobe 2 mm74bv2mmensgcdf 2 cfcanine2cfensg7probe 1 mm430mmensgcdf 2 mm74bv2mmenseprobe 2 mm74bv2mmensgprobe 2 CelegansGenome.ce2 1 mm430bmmug 3 mm74cv2mmensecdf 3 mm74bv2mmentrezgprobe 2 mm430ammensgprobe 3 mm430bmmenst 3 mm74bv2mmensg 3 mm74cv2mmenst 2 mm430bmmensgprobe 3 mm430bmmvegagprobe 2 mm430mmrefseqprobe 3 mamurhesusmamuensgcdf 1 mm74cv2mmense 3 mm430ammvegaeprobe 2 mm74bv2mmentrezgcdf 2 mamurhesusmamuenst 2 BSgenome.Drerio.UCSC.danRer10 78 hsex10stv2ptentrezgprobe 1 hsex10stv2ptensgprobe 1 mm430ammugcdf 3 mm430mmugcdf 3 mm430mmrefseqcdf 3 mm74av2mmensecdf 3 mm74av1mmugprobe 3 mm74av2mmentrezg 3 mmex10stv1mmrefseq 1 mmex10stv1mmensecdf 1 osriceostigrcdf 2 vvgrapevvtigrcdf 1 hs133pptrefseqcdf 3 hs133av2hsvegagcdf 2 org.Hs.ref.db 5 mm430a2mmenstprobe 1 mm430mmvegagprobe 1 mm74av1mmvegat 2 mm74av2mmvegagprobe 2 mm74cv2mmvegag 1 pedbarrayv10 3 SHDZ 3 mamurhesusmamuensecdf 3 mamurhesusmamuensgprobe 1 hs133phsvegatcdf 2 sc.dbsubloc.db 4 scop.db 2 hs133xhsvegae 1 hs133xhsvegagcdf 2 hs133xhsvegat 2 hs133xhsvegatprobe 2 int.mppi.db 2 dName.db 3 hs95av2hsvegat 2 hs95av2hsvegatcdf 2 mm430a2mmvegae 2 MeSH.Eco.APEC01.eg.db 0 MeSH.Bsu.Bsn5.eg.db 0 MeSH.Atu.K84.eg.db 1 MeSH.Hsa.eg.db 20 BSgenome.Hsapiens.UCSC.hg38.masked 143 MeSH.Cal.SC5314.eg.db 17 MeSH.Cel.eg.db 19 MeSH.Cja.eg.db 18 MeSH.Ddi.AX4.eg.db 17 MeSH.Der.eg.db 17 MeSH.Dgr.eg.db 18 MeSH.Dpe.eg.db 19 MeSH.Eco.K12.MG1655.eg.db 16 MeSH.Eco.O157.H7.Sakai.eg.db 18 MeSH.Mtr.eg.db 16 MeSH.Osa.eg.db 17 MeSH.Pab.eg.db 17 MeSH.Sco.A32.eg.db 17 MeSH.Spu.eg.db 17 MeSH.Ssc.eg.db 17 MeSH.Zma.eg.db 17 EnsDb.Mmusculus.v75 47 MeSH.Sau.MSSA476.eg.db 0 MeSH.Sau.ED98.eg.db 0 MeSH.Sau.Newman.eg.db 0 MeSH.Sau.M013.eg.db 0 MeSH.Sau.MSHR1132.eg.db 0 MeSH.Sau.VC40.eg.db 0 hu35ksuba 5 XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 49 zmahomology 3 taehomology 3 vvihomology 4 zebrafish 4 ygs98 4 xenopuslaevis 4 rnu34 4 rnex10stv1rnentrezg7probe 1 rnex10stv1rnensg7probe 1 rnex10stv1rnenst7probe 1 rn34arnug7probe 1 rn34arnrefseq7probe 1 rn230rnug7cdf 1 rn230rnrefseq7cdf 1 rn34arnense7cdf 1 rn230rnug7probe 1 rnex10stv1rnrefseq7probe 1 rn230brnense7cdf 1 rn230brnentrezg7probe 2 rn34arnug7cdf 1 rn34arnrefseq7cdf 1 rn230arnentrezg7cdf 1 rn230rnenst7probe 1 rn230brnentrezg7cdf 1 rn230arnenst7probe 2 rn230arnense7probe 1 rgug4130a 4 rgug4105a 4 rn230arnug7cdf 1 rgu34a 4 BSgenome.Hsapiens.1000genomes.hs37d5 732 hsfocushsvegaecdf 2 hsfocushsvegag 2 btbovinebtensgprobe 2 drzebrafishdrvegat 2 mgug4120a 4 mgug4121a 4 mm11ksubammense7cdf 2 mm11ksubammenst7cdf 1 mm11ksubammentrezg7cdf 1 mm11ksubbmmense7cdf 1 mm11ksubbmmense7probe 1 mm11ksubammrefseq7cdf 1 mm11ksubbmmensg7probe 1 mm11ksubbmmug7cdf 1 mm11ksubbmmug7probe 1 mm430ammense7probe 1 mm430ammenst7probe 2 mm430bmmense7cdf 1 mm430bmmense7probe 1 mm430bmmensg7cdf 2 mm430bmmenst7cdf 1 mm430bmmrefseq7probe 1 mm430mmenst7cdf 2 mm430mmrefseq7cdf 1 mm430mmrefseq7probe 1 mm430mmug7cdf 1 mm430mmug7probe 1 mm74av1mmense7probe 2 mm74av1mmenst7cdf 1 mm74av1mmentrezg7probe 1 mm74av2mmenst7probe 2 mm74av2mmug7cdf 1 mmex10stv1mmense7probe 1 mmex10stv1mmensg7cdf 1 mmex10stv1mmensg7probe 1 mmex10stv1mmentrezg7probe 1 mmex10stv1mmug7probe 1 atgenomeatrefseq 2 atgenomeatrefseqprobe 2 ath1attaircdf 2 ath1attairprobe 2 BSgenome.Hsapiens.UCSC.hg16 2 ggchickenggenst7cdf 1 ggchickenggrefseq7cdf 1 ggchickenggrefseq7probe 1 ggchickenggug7probe 1 ggahomology 4 ncrhomology 4 osriceosrefseq7cdf 2 osriceostigr7cdf 1 hs133xhsug 3 hs133xptenstprobe 3 hs133xptentrezgcdf 3 hs25kresogen 3 hs95av2hsenseprobe 2 hs95av2hsentrezgprobe 2 hs95av2hsrefseq 2 hs95av2ptentrezgprobe 3 hsex10stv2hsenseprobe 1 hsex10stv2hsentrezgprobe 1 hsex10stv2hsrefseqcdf 1 hsex10stv2hsug 1 btbovinebtenseprobe 2 btbovinebtensgcdf 2 btbovinebtug 1 btbovinebtugcdf 2 btbovinebtugprobe 2 celhomology 4 cfcanine2cfensgprobe 2 cfcanine2cfug 2 cfcanine2cfvegat 2 cfcanine2cfvegatcdf 2 dmdrosophila2dmensecdf 2 dmdrosophila2dmenseprobe 2 dmdrosophila2dmensg 2 dmdrosophila2dmensgprobe 2 dmdrosophila2dmug 2 dmdrosophila2dmugcdf 2 dmehomology 3 dmgenome1dmensgcdf 2 dmgenome1dmenstprobe 2 dmgenome1dmrefseq 2 dmgenome1dmrefseqcdf 2 dmgenome1dmugprobe 2 drosgenome1 3 drzebrafishdrense 3 drzebrafishdrensecdf 2 drzebrafishdrenseprobe 2 drzebrafishdrrefseq 2 drzebrafishdrug 2 ggchickenggensg 2 ggchickenggentrezgcdf 1 ggchickenggrefseq 2 hgug4111a 3 hs133ahsense 3 hs133ahsensecdf 2 hs133ahsenst 3 hs133ahsug 3 hs133ahsugcdf 3 hs133ahsvegatcdf 1 hs133aptensg 3 hs133aptenstcdf 2 hs133av2hsenstcdf 2 hs133av2hsrefseqcdf 3 hs133av2hsrefseqprobe 2 hs133av2hsugcdf 3 hs133av2hsvegae 2 hsex10stv2hsense7probe 1 hsex10stv2hsensg7cdf 1 hsex10stv2hsrefseq7probe 1 hsex10stv2hsug7probe 2 hsfocushsenst7cdf 1 hsfocushsenst7probe 1 hsfocusptensg7cdf 1 mgu74bv2 4 mgu74c 4 mguatlas5k 4 mm11ksubammensecdf 2 mm11ksubammenseprobe 3 mm11ksubammensgcdf 2 mm11ksubammugcdf 2 mm11ksubbmmensecdf 3 mm11ksubbmmensgcdf 2 mm11ksubbmmensgprobe 2 mm11ksubbmmenst 3 mm11ksubbmmentrezgcdf 2 mm11ksubbmmrefseqprobe 2 mm11ksubbmmugcdf 2 mm24kresogen 3 mm430ammensecdf 3 rn230arnensgprobe 3 rn230arnenst 3 rn230arnenstcdf 3 rn230arnenstprobe 2 rn230arnentrezg 3 rn230arnentrezgprobe 2 rn230brnenseprobe 3 rn230brnensgcdf 3 rn230brnensgprobe 3 rn230brnrefseqprobe 2 rn230brnugcdf 3 rn230brnugprobe 3 rn230rnenstprobe 3 rn230rnentrezgcdf 3 rn230rnrefseq 3 rn230rnrefseqprobe 2 rn230rnug 3 rn34arnensg 2 rn34arnensgprobe 2 rn34arnenst 2 rn34arnenstcdf 2 rn34arnentrezgcdf 3 rn34arnug 2 rnex10stv1rnensecdf 1 rnex10stv1rnentrezg 1 rnex10stv1rnrefseq 2 dmdrosophila2dmrefseq7cdf 1 dmgenome1dmensg7probe 1 dmgenome1dmenst7cdf 1 hs133ahsense7cdf 1 hs133ahsensg7probe 1 hs133ahsenst7probe 1 hs133ahsentrezg7probe 1 hs133ahsrefseq7cdf 1 hs133ahsug7cdf 1 hs133aptensg7probe 1 hs133av2hsenst7probe 1 hs133av2hsentrezg7cdf 1 hs133av2hsug7probe 1 hs133bhsentrezg7cdf 1 hs133bhsrefseq7probe 1 hs133bhsug7probe 1 hs133phsensg7cdf 1 hs133phsensg7probe 1 hs95av2hsrefseq7cdf 1 hs133xptense7cdf 2 hs95av2hsense7probe 1 hs95av2hsenst7probe 1 hs95av2hsug7cdf 1 hs133av2ptenstprobe 2 hs133av2ptentrezgprobe 2 hs133bhsensecdf 2 hs133bhsensgprobe 3 hs133bhsenstcdf 3 hs133bhsentrezgcdf 3 hs133bhsentrezgprobe 2 hs133bptensecdf 3 hs133bptensgcdf 2 hs133bptensgprobe 3 hs133bptentrezgprobe 2 hs133phsensg 3 hs133phsensgcdf 2 hs133pptenst 3 hs133pptenstcdf 3 hs133xhsensecdf 3 hs133xhsensgcdf 3 rnex10stv1rnrefseqprobe 1 rnex10stv1rnugcdf 2 mm74av2mmvegat 2 mm11ksubammvegatprobe 2 mm74av1mmvegaeprobe 2 mm74av2mmvegaeprobe 2 mm74cv2mmensgprobe 2 mm74av2mmenseprobe 3 mm74av1mmensecdf 3 mm74av1mmvegaecdf 2 mm74cv2mmrefseq 3 mm74av1mmvegatcdf 2 mm430bmmvegagcdf 2 hsfocushsenstprobe 2 mm430ammugprobe 3 hs133av2ptensgprobe 3 mm74av2mmvegagcdf 2 hsfocushsvegagcdf 2 mm11ksubbmmvegat 1 mm11ksubbmmvegagprobe 2 mm74av2mmenstprobe 3 mm74av1mmensg 2 mm430a2mmentrezgcdf 2 mm74av1mmensgcdf 2 hsfocusptentrezgcdf 2 org.Hs.goa.db 6 osriceosrefseq 3 mm74bv2mmentrezg 3 hsfocushsenstcdf 2 mm430bmmenstprobe 2 mm74cv2mmvegatprobe 2 hsfocushsenseprobe 2 mm430mmvegatprobe 2 mm74bv2mmvegaeprobe 2 hs133av2hsvegag 2 hsfocushsrefseq 3 mm74av2mmentrezgprobe 3 mm74av1mmenstcdf 3 hsfocushsvegae 2 mm430ammrefseqcdf 3 hsfocushsensgprobe 2 mm11ksubbmmvegae 2 hsfocusptensg 2 mm430ammenseprobe 2 mm430bmmvegag 2 mm430bmmense 3 mm74av2mmvegatprobe 2 hsfocushsrefseqcdf 3 mm74av2mmenst 3 mm74av2mmvegag 2 mm430a2mmensgcdf 2 mm74av1mmrefseqcdf 2 mm74av1mmvegae 2 mm74bv2mmugcdf 2 mm430bmmrefseqprobe 3 hs133xhsvegatcdf 2 mm74bv2mmvegat 2 mm74bv2mmrefseqcdf 3 mm430bmmvegat 2 mm74cv2mmensg 2 mm430a2mmvegatcdf 1 mamurhesusmamuense 2 mm74av2mmrefseq 3 mm430bmmentrezgcdf 2 mm430a2mmentrezg 2 mm74cv2mmentrezgcdf 2 mamurhesusmamuug 1 mm74cv2mmensgcdf 2 hsfocusptenstprobe 3 hs133xhsvegagprobe 2 mm74cv2mmvegae 1 mm430ammvegagprobe 2 hsfocusptensgprobe 3 mm430ammenstcdf 2 mm430mmenstcdf 2 hs133bhsvegagprobe 2 mm11ksubammvegaecdf 1 hs133av2hsvegatcdf 2 mm430mmentrezgprobe 2 hsex10stv2ptenst 2 hsex10stv2ptentrezgcdf 1 mm430bmmugprobe 2 mm74bv2mmenstprobe 3 mm74cv2mmrefseqprobe 2 mmex10stv1mmensg 1 mmex10stv1mmense 1 mmex10stv1mmentrezgcdf 1 mmex10stv1mmentrezg 1 mmex10stv1mmug 1 mmex10stv1mmenstprobe 1 mmex10stv1mmugprobe 1 vvgrapevvtigr 1 hs133phsvegaeprobe 2 mm74cv2mmvegagcdf 2 mamurhesusmamuentrezgcdf 1 PartheenMetaData 2 hsex10stv2ptentrezg 1 hs133phsvegat 2 ath1attigr7cdf 1 mamurhesusmamuensg 2 mm430bmmvegatprobe 1 hs133phsvegaecdf 1 hs133phsvegag 2 sc.bacello.db 2 sysptm.db 3 mm11ksubbmmvegag 2 mm430a2mmenseprobe 2 org.Hs.pep.db 1 org.Mm.sp.db 4 hs133bhsvegae 2 hs133bhsvegaecdf 2 hs133bhsvegat 2 int.did.db 2 int.intact.db 6 hs133xptrefseqcdf 2 mm430ammvegagcdf 2 mm430ammvegatcdf 2 illuminaMousev1p1ProbeID.db 2 illuminaMousev2ProbeID.db 1 JazaeriMetaData 2 mamurhesusmamurefseq 1 mamurhesusmamurefseqprobe 1 MeSH.Eco.B.REL606.eg.db 0 MeSH.Sau.Mu50.eg.db 0 MeSH.Eco.UTI89.eg.db 0 MeSH.Eco.O111.H.11128.eg.db 0 BSgenome.Hsapiens.UCSC.hg38 3898 MeSH.Ame.eg.db 19 MeSH.Ani.FGSC.eg.db 17 MeSH.Bfl.eg.db 17 MeSH.Bsu.TUB10.eg.db 11 MeSH.Cfa.eg.db 17 MeSH.Cre.eg.db 16 MeSH.Dme.eg.db 18 MeSH.Dya.eg.db 16 MeSH.Eco.CFT073.eg.db 12 MeSH.Eco.HS.eg.db 11 MeSH.Eco.O157.H7.EDL933.eg.db 11 MeSH.Eco.S88.eg.db 11 MeSH.Mdo.eg.db 17 MeSH.Miy.eg.db 17 MeSH.Mmu.eg.db 19 MeSH.Oan.eg.db 17 MeSH.Oni.eg.db 16 MeSH.Sce.S288c.eg.db 17 MeSH.Tgo.ME49.eg.db 16 LowMACAAnnotation 28 EnsDb.Hsapiens.v79 270 EnsDb.Rnorvegicus.v75 34 MafDb.ALL.wgs.phase3.release.v5a.20130502 11 ath1atrefseq7probe 1 BSgenome.Btaurus.UCSC.bosTau8 33 h10kcod 3 phastCons7way.UCSC.hg38 48 MeSH.Eco.O26.H11.11368.eg.db 0 MeSH.Sau.MW2.eg.db 0 MeSH.Eco.O157.H7.TW14359.eg.db 0 MeSH.Bsu.RONN1.eg.db 0 MeSH.Eco.SMS35.eg.db 0 MeSH.Bsu.W23.eg.db 0 MeSH.Sau.Mu3.eg.db 0 TxDb.Athaliana.BioMart.plantsmart25 27 SNPlocs.Hsapiens.dbSNP144.GRCh37 702 spohomology 4 vvgrapevvtigr7cdf 1 rnex10stv1rnrefseq7cdf 1 rn34arnentrezg7cdf 1 rn230rnense7probe 1 rn230brnrefseq7cdf 1 rnex10stv1rnug7probe 1 rnex10stv1rnensg7cdf 1 rn34arnentrezg7probe 1 rn230brnensg7cdf 1 rn230brnug7cdf 1 rn34arnensg7cdf 2 rn230arnentrezg7probe 1 rn230arnenst7cdf 1 rn230arnensg7probe 1 rn230arnug7probe 1 prt440acdf 2 prt440scdf 1 hsfocusptenst 3 rn230arnensgcdf 2 hsfocusptenstcdf 3 hsfocushsensg 3 ath1attigr7probe 1 mm11ksubammentrezg7probe 1 mm11ksubammug7probe 1 mm11ksubbmmenst7cdf 1 mm430ammensg7cdf 1 mm430ammensg7probe 1 mm430ammentrezg7probe 1 mm430bmmentrezg7probe 1 mm430bmmug7probe 1 mm430mmense7probe 1 mm430mmensg7probe 2 mm430mmenst7probe 1 mm74av1mmensg7probe 1 mm74av1mmentrezg7cdf 1 mm74av1mmrefseq7cdf 1 mm74av2mmentrezg7cdf 1 mm74av2mmentrezg7probe 1 mm74av2mmrefseq7probe 1 mm74av2mmug7probe 1 mmex10stv1mmenst7probe 1 mmex10stv1mmug7cdf 2 atgenomeatrefseqcdf 2 atgenomeattairprobe 2 atgenomeattigrcdf 1 ath1attigrprobe 1 ggchickenggense7probe 1 ggchickenggug7cdf 1 drzebrafishdrrefseq7probe 1 drzebrafishdrug7probe 1 hcg110 4 mu11ksuba 4 mu11ksubb 4 mu19ksuba 4 mu19ksubc 4 omyhomology 4 osahomology 4 pfahomology 3 hs133xhsentrezg 3 hs133xhsentrezgcdf 3 hs133xhsrefseq 2 hs133xhsrefseqprobe 2 hs133xhsugcdf 2 hs133xhsugprobe 2 hs133xptenseprobe 3 hs133xptensg 3 hs133xptensgcdf 3 hs133xptenst 3 hs133xptenstcdf 3 hs133xptentrezg 3 hs95av2hsenst 2 hs95av2hsenstprobe 2 hs95av2hsugcdf 3 hs95av2hsugprobe 2 hs95av2ptensecdf 3 hs95av2ptenseprobe 3 hsex10stv2hsensgprobe 1 hsex10stv2hsenst 2 hsex10stv2hsenstcdf 2 btbovinebtensecdf 2 btbovinebtentrezgcdf 2 btbovinebtrefseq 2 cfcanine2cfensecdf 3 cfcanine2cfenseprobe 2 cfcanine2cfensgcdf 2 cfcanine2cfenst 2 cfcanine2cfenstcdf 2 cfcanine2cfentrezgcdf 2 chicken 2 dmdrosophila2dmensgcdf 2 dmdrosophila2dmenstcdf 2 dmdrosophila2dmenstprobe 2 dmgenome1dmensecdf 3 dmgenome1dmenstcdf 2 dmgenome1dmug 2 drzebrafishdrensg 3 drzebrafishdrenst 2 drzebrafishdrenstcdf 2 drzebrafishdrentrezgcdf 2 drzebrafishdrrefseqprobe 2 drzebrafishdrvegatcdf 2 drzebrafishdrvegatprobe 1 ggchickenggenseprobe 2 ggchickenggenst 2 ggchickenggrefseqcdf 2 ggchickenggrefseqprobe 2 ggchickenggugprobe 2 hgubeta7 3 hgug4101a 4 hgug4110b 4 hgug4112a 4 hs133ahsensg 3 hs133ahsenstprobe 2 hs133ahsrefseq 2 hs133ahsvegae 2 hs133ahsvegag 2 hs133ahsvegagcdf 2 hs133ahsvegatprobe 2 hs133aptense 3 hs133aptensecdf 2 hs133aptenseprobe 3 hs133aptenst 2 hs133aptentrezgcdf 2 hs133aptrefseq 2 hs133aptrefseqprobe 1 hs133av2hsensecdf 3 hs133av2hsensgcdf 2 hs133av2hsensgprobe 2 hs133av2hsrefseq 2 hs133av2hsvegaecdf 2 HsapiensGenome.hg18 2 hsex10stv2ptense7cdf 1 hsex10stv2ptense7probe 1 hsfocushsense7cdf 1 hsfocushsentrezg7probe 1 hsfocusptensg7probe 1 hu35ksubd 4 mgu74cv2 4 mgrhomology 3 mgu74a 5 mgu74b 5 mm11ksubammense 2 mm11ksubammensg 1 mm11ksubammenst 2 mm11ksubammenstprobe 3 mm11ksubbmmense 2 mm11ksubbmmenseprobe 2 mm11ksubbmmensg 3 mm11ksubbmmenstprobe 3 mm11ksubbmmentrezg 2 mm11ksubbmmrefseq 3 mm11ksubbmmugprobe 2 mm430ammense 3 rn230arnentrezgcdf 3 rn230arnug 3 rn230arnugcdf 2 rn230brnensecdf 3 rn230brnensg 3 rn230brnentrezgcdf 2 rn230brnug 3 rn230rnense 2 rn230rnenseprobe 2 rn230rnensg 3 rn230rnensgcdf 2 rn230rnenstcdf 3 rn230rnrefseqcdf 3 rn34arnense 3 rn34arnentrezg 2 rn34arnrefseqprobe 2 rnex10stv1rnense 2 rnex10stv1rnenseprobe 1 rnex10stv1rnensg 2 rnex10stv1rnensgprobe 2 rnex10stv1rnentrezgcdf 1 rnex10stv1rnrefseqcdf 2 dmdrosophila2dmensg7cdf 1 cfcanine2cfentrezg7cdf 1 cfcanine2cfrefseq7probe 1 cfcanine2cfug7probe 1 dmdrosophila2dmrefseq7probe 1 DmelanogasterGenome.dm2 1 drzebrafishdrensg7probe 1 hs133ahsense7probe 1 hs133ahsensg7cdf 1 hs133aptensg7cdf 1 hs133av2ptense7probe 1 hs133bhsensg7cdf 1 hs133bhsensg7probe 1 hs133bhsenst7probe 2 hs133bhsug7cdf 1 hs133bptense7cdf 2 hs133xhsensg7cdf 2 hs133xhsentrezg7cdf 1 hs133xhsrefseq7cdf 1 hs95av2hsense7cdf 2 hs95av2hsensg7probe 1 hs95av2ptense7probe 1 hs133av2ptenstcdf 2 hs133av2ptentrezg 3 hs133bhsenstprobe 3 hs133bptense 3 hs133bptensg 3 hs133bptenst 2 hs133bptenstcdf 3 hs133bptentrezgcdf 3 hs133phsensecdf 2 hs133phsenstcdf 2 hs133phsentrezgprobe 2 hs133phsrefseqcdf 3 hs133phsugprobe 3 hs133pptentrezg 2 hs133pptentrezgcdf 3 hs133xhsensg 3 hs133xhsensgprobe 2 hs133xhsenst 3 hs133xhsenstcdf 3 rnex10stv1rnugprobe 1 mm74cv2mmenstcdf 2 org.Mm.ref.db 2 hs133av2ptensecdf 2 mm74cv2mmvegaecdf 1 mm430a2mmentrezgprobe 2 mm430ammug 3 hsfocushsentrezgprobe 2 mm74cv2mmvegaeprobe 2 mm430ammvegag 2 mm74cv2mmentrezgprobe 2 greengenes13.5MgDb 7 Mu22v3 2 hs133phsvegatprobe 2 rn230arnense 3 mm430a2mmvegagprobe 2 hs95av2hsvegatprobe 2 mm11ksubammvegat 1 mm430bmmvegae 2 mm430mmvegaecdf 2 mm430a2mmvegag 2 osriceosrefseqcdf 2 mm430mmrefseq 3 mm430a2mmvegat 2 mm74av1mmenst 2 mm74av2mmvegatcdf 2 hs133pptrefseqprobe 1 mm430a2mmenst 1 mm74av1mmenseprobe 3 mm11ksubbmmvegaeprobe 1 mm74cv2mmrefseqcdf 2 hsfocushsensgcdf 2 mm430ammvegat 2 mm430mmvegag 2 mm74av2mmrefseqcdf 3 hs133phsvegagprobe 2 hs133bhsvegaeprobe 2 mm430ammensgcdf 2 mm430mmvegaeprobe 2 hsfocusptrefseqcdf 2 hs133bhsvegatprobe 1 mm430a2mmenstcdf 1 ath1atrefseq7cdf 1 mm430mmugprobe 3 hsfocushsugprobe 2 mm430ammvegatprobe 2 mm74bv2mmvegae 2 mm430mmenst 3 Mu15v1 3 mm74av2mmense 3 hs95av2ptrefseqcdf 2 hsfocusptentrezgprobe 2 mm74av2mmvegae 2 mm74bv2mmvegagprobe 2 mamurhesusmamurefseqcdf 1 mm430bmmentrezgprobe 2 hs95av2ptrefseq 2 mamurhesusmamuenstcdf 2 hs133av2hsvegatprobe 2 mm430mmensgprobe 2 hs95av2hsvegaeprobe 2 mm430bmmvegatcdf 2 mm74cv2mmvegatcdf 2 hsfocusptensgcdf 2 BSgenome.Tguttata.UCSC.taeGut2 27 mm430a2mmrefseqcdf 1 mm430bmmrefseq 3 hsex10stv2hsugprobe 2 hsex10stv2ptenseprobe 2 mm430ammensg 3 mm430ammentrezgprobe 2 mm430bmmensg 2 mm430bmmentrezg 3 mm430mmentrezg 3 mm430mmug 3 mm74av2mmensg 3 mm74bv2mmensecdf 2 mm74cv2mmenstprobe 2 mmex10stv1mmenseprobe 1 mm74cv2mmug 2 mmex10stv1mmensgcdf 1 mmex10stv1mmrefseqprobe 1 mmex10stv1mmenstcdf 1 mmex10stv1mmensgprobe 1 mmex10stv1mmrefseqcdf 1 osriceostigrprobe 2 rn230arnenseprobe 3 hs133av2ptenseprobe 3 atgenomeatrefseq7cdf 1 mm74av1mmvegagprobe 2 mm74av1mmvegagcdf 2 mm74av1mmvegatprobe 2 mm74bv2mmvegatprobe 1 mmex10stv1mmugcdf 1 hs133phsvegagcdf 2 hs133bptrefseqcdf 2 mm430bmmvegaeprobe 2 cfcanine2cfense7probe 1 HuO22 3 hs95av2hsvegae 2 hs95av2hsvegag 2 hs95av2hsvegagcdf 2 mm11ksubbmmvegatprobe 2 mm430a2mmense 1 mamurhesusmamuenstprobe 2 mamurhesusmamuentrezg 1 org.Mm.ipi.db 2 org.Rn.cross.db 2 hs133bhsvegag 2 hs133bhsvegagcdf 2 hs133bhsvegatcdf 2 int.domine.db 4 illuminaHumanv1ProbeID.db 2 illuminaMousev1ProbeID.db 1 mamurhesusmamuentrezgprobe 1 hcgi12k 1 mm430a2mmensgprobe 1 MeSH.Eco.SE11.eg.db 0 MeSH.Bsu.168.eg.db 19 MeSH.Aga.PEST.eg.db 18 MeSH.Aml.eg.db 17 MeSH.Ana.eg.db 16 MeSH.Bta.eg.db 17 MeSH.Cin.eg.db 18 MeSH.Cpo.eg.db 18 MeSH.Eco.55989.eg.db 16 MeSH.Eco.O127.H6.E2348.69.eg.db 11 MeSH.Gga.eg.db 16 MeSH.Gma.eg.db 18 MeSH.Lma.eg.db 17 MeSH.Mes.eg.db 15 MeSH.Mga.eg.db 18 MeSH.Nle.eg.db 17 MeSH.Ptr.eg.db 19 MeSH.Rno.eg.db 18 MeSH.Sau.USA300TCH1516.eg.db 11 MeSH.Vvi.eg.db 17 MeSH.Xtr.eg.db 18 EnsDb.Hsapiens.v75 771 hta20sttranscriptcluster.db 11 MeSH.Pae.PA14.eg.db 0 MeSH.Sau.RF122.eg.db 0 MeSH.Eco.O157.H7.EC4115.eg.db 0 MeSH.Eco.BW2952.eg.db 0 MeSH.Sau.N315.eg.db 0 hta20stprobeset.db 11 pd.mta.1.0 43 MeSH.Pae.PA7.eg.db 0 EnsDb.Mmusculus.v79 680 grasp2db 57 moe430a 4 moe430b 4 XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 68 rtu34 4 sschomology 4 scehomology 3 vvgrapevvtigr7probe 1 rnohomology 3 rnex10stv1rnentrezg7cdf 1 rnex10stv1rnenst7cdf 1 rnex10stv1rnense7cdf 1 rn34arnense7probe 1 rn230rnentrezg7probe 2 rn230rnensg7probe 2 rn230rnensg7cdf 1 rn230brnense7probe 1 rn230brnensg7probe 2 rn34arnenst7cdf 1 rn230brnenst7probe 1 rn230arnensg7cdf 1 rn230arnrefseq7probe 1 rn230arnense7cdf 1 rgu34b 5 ratLLMappings 4 ptrhomology 4 hu35ksubb 5 hsfocushsvegat 2 TxDb.Athaliana.BioMart.plantsmart28 57 rn34arnugprobe 2 mgug4104a 5 mm11ksubammensg7probe 1 mm11ksubammenst7probe 1 mm11ksubammrefseq7probe 1 mm11ksubammug7cdf 1 mm11ksubbmmentrezg7cdf 1 mm11ksubbmmrefseq7cdf 1 mm430ammense7cdf 2 mm430ammentrezg7cdf 2 mm430ammrefseq7probe 1 mm430ammug7cdf 1 mm430ammug7probe 1 mm430bmmenst7probe 1 mm430bmmrefseq7cdf 2 mm430bmmug7cdf 2 mm430mmense7cdf 1 mm430mmentrezg7probe 1 mm74av1mmense7cdf 2 mm74av1mmensg7cdf 1 mm74av2mmensg7cdf 1 mm74av2mmensg7probe 1 mm74av1mmug7probe 1 mm74av2mmense7probe 2 mm74av2mmrefseq7cdf 1 mmex10stv1mmenst7cdf 1 mmex10stv1mmentrezg7cdf 1 atgenomeattair 2 atgenomeattaircdf 2 ath1atrefseqcdf 2 ath1atrefseqprobe 2 ggchickenggense7cdf 1 ggchickenggensg7probe 1 mu19ksubb 4 osriceosrefseq7probe 1 osriceostigr7probe 2 hs133xhsrefseqcdf 2 hs133xptense 2 hs133xptensecdf 3 hs133xptentrezgprobe 3 hs95av2hsensecdf 2 hs95av2hsensgcdf 3 hs95av2hsensgprobe 2 hs95av2ptentrezg 2 hs95av2ptentrezgcdf 3 hs95av2hsrefseqprobe 2 hs95av2ptense 2 hsex10stv2hsense 1 hsex10stv2hsenstprobe 1 btbovinebtense 2 btbovinebtenstcdf 2 btbovinebtentrezg 2 btbovinebtentrezgprobe 2 canine2 3 cfcanine2cfrefseq 2 cfcanine2cfrefseqprobe 2 cfcanine2cfvegatprobe 1 cinhomology 3 dmdrosophila2dmenst 2 dmdrosophila2dmugprobe 2 dmgenome1dmenseprobe 2 dmgenome1dmensgprobe 2 dmgenome1dmrefseqprobe 2 drehomology 3 drzebrafishdrensgcdf 2 drzebrafishdrentrezg 2 drzebrafishdrrefseqcdf 2 ggchickenggense 2 ggchickenggensecdf 2 ggchickenggenstprobe 2 ggchickenggugcdf 2 hs133ahsenseprobe 3 hs133ahsensgprobe 2 hs133ahsentrezgprobe 2 hs133ahsrefseqprobe 3 hs133ahsvegaecdf 2 hs133ahsvegagprobe 2 hs133ahsvegat 2 hs133aptensgprobe 3 hs133aptenstprobe 3 hs133aptrefseqcdf 1 hs133av2hsenst 3 hs133av2hsensg 2 hs133av2hsentrezgprobe 2 hsex10stv2hsensg7probe 1 hsex10stv2hsenst7probe 1 hsex10stv2hsentrezg7cdf 1 hsex10stv2hsentrezg7probe 1 hsex10stv2ptensg7probe 1 hsfocushsensg7cdf 1 hsfocushsentrezg7cdf 1 hsfocushsug7cdf 1 hsfocusptense7cdf 1 hu35ksubc 4 klahomology 4 m10kcod 4 mm11ksubammensgprobe 3 mm11ksubammenstcdf 2 mm11ksubammentrezgcdf 3 mm11ksubammrefseqcdf 2 mm11ksubammugprobe 3 mm11ksubbmmenstcdf 2 mm11ksubbmmrefseqcdf 2 mm11ksubbmmug 2 rn230arnrefseqcdf 3 rn230arnrefseqprobe 3 rn230arnugprobe 3 rn230brnense 2 rn230brnenst 3 rn230brnenstprobe 2 rn230brnrefseqcdf 2 rn230rnensgprobe 3 rn230rnenst 2 rn34arnensecdf 2 rn34arnensgcdf 3 rn34arnenstprobe 2 rn34arnrefseqcdf 2 rn34arnugcdf 2 rnex10stv1rnensgcdf 1 rnex10stv1rnenst 1 dmdrosophila2dmense7cdf 1 dmdrosophila2dmenst7probe 1 cfcanine2cfentrezg7probe 1 cfcanine2cfrefseq7cdf 1 cfcanine2cfug7cdf 1 dmdrosophila2dmug7cdf 1 dmgenome1dmense7probe 1 dmgenome1dmrefseq7cdf 1 dmgenome1dmug7probe 1 drzebrafishdrense7cdf 1 drzebrafishdrensg7cdf 1 drzebrafishdrenst7probe 1 drzebrafishdrentrezg7cdf 1 drzebrafishdrentrezg7probe 1 drzebrafishdrrefseq7cdf 1 hs133ahsentrezg7cdf 1 hs133aptense7cdf 1 hs133av2hsense7cdf 1 hs133av2hsensg7cdf 1 hs133av2hsrefseq7cdf 1 hs133av2hsrefseq7probe 1 hs133av2hsug7cdf 1 hs133bhsenst7cdf 1 hs133phsense7cdf 1 hs133phsense7probe 1 hs133phsrefseq7cdf 2 hs133phsug7cdf 1 hs133xhsenst7cdf 2 hs95av2hsentrezg7cdf 1 hs95av2hsentrezg7probe 1 hs95av2hsrefseq7probe 1 hs133xhsug7cdf 1 hs133xptense7probe 1 hs95av2hsensg7cdf 1 hs95av2hsenst7cdf 1 hs133av2ptentrezgcdf 2 hs133bhsensg 3 hs133bhsensgcdf 3 hs133bhsenst 3 hs133bhsentrezg 3 hs133bhsrefseq 3 hs133bhsrefseqcdf 3 hs133bhsrefseqprobe 3 hs133bhsug 3 hs133bhsugcdf 3 hs133bptenstprobe 2 hs133phsensgprobe 3 hs133phsenst 3 hs133phsenstprobe 2 hs133phsug 3 hs133phsugcdf 3 hs133pptense 3 hs133pptensgcdf 3 hs133pptenstprobe 2 hs133pptentrezgprobe 3 hs133xhsense 3 HsapiensGenome.hg17 1 BSgenome.Vvinifera.URGI.IGGP12Xv0 28 BSgenome.Vvinifera.URGI.IGGP12Xv2 31 mm430a2mmvegaecdf 1 hs133av2hsvegagprobe 2 mm74bv2mmense 2 mm74cv2mmugprobe 3 mm74av1mmugcdf 3 mm430ammrefseqprobe 2 mm430bmmrefseqcdf 3 mm430bmmenstcdf 3 mm430ammrefseq 2 mm11ksubbmmvegaecdf 1 mm74bv2mmvegatcdf 1 org.Hs.cross.db 8 mm74av1mmug 3 mm74av2mmug 3 mm74av2mmensgprobe 3 mm430bmmvegaecdf 2 mm430bmmensecdf 2 hs133xptrefseqprobe 2 hs133xhsvegaeprobe 2 mm74bv2mmvegagcdf 2 mm74av2mmvegaecdf 2 mm74av1mmentrezg 2 mm430a2mmvegatprobe 2 mm11ksubbmmvegatcdf 2 hsfocusptentrezg 3 mm74av2mmenstcdf 2 mm74bv2mmenstcdf 3 hsfocushsug 2 hsfocushsvegaeprobe 2 mm430mmvegatcdf 2 mm74cv2mmugcdf 2 mm74av1mmrefseqprobe 2 mm11ksubammvegaeprobe 1 mm430a2mmugprobe 1 mm11ksubammvegagprobe 1 mm11ksubammvegagcdf 2 hsfocushsenst 2 hs133av2ptense 2 mm74av2mmugprobe 3 mm74av1mmensgprobe 3 mm74av1mmvegag 2 hsfocushsvegagprobe 2 MmusculusGenome.mm7 1 mm430a2mmvegagcdf 1 mm74av2mmentrezgcdf 3 hsfocushsrefseqprobe 3 mm430ammenstprobe 2 hs133av2ptrefseqprobe 2 mm430mmvegagcdf 2 hs133xhsvegaecdf 2 mm74bv2mmvegaecdf 2 hs133bptrefseqprobe 2 mm430mmvegat 2 mpedbarray 2 hs133av2ptrefseq 1 hsfocusptense 2 mm74bv2mmrefseq 3 hs133av2hsvegat 2 hsfocusptenseprobe 2 mm11ksubbmmvegagcdf 1 mm430ammvegae 2 hs133xptrefseq 2 hsfocushsentrezg 3 hsfocusptrefseq 2 Roberts2005Annotation 3 hsex10stv2ptensecdf 1 hsex10stv2ptense 2 hsex10stv2ptensg 1 hsex10stv2ptensgcdf 1 hsex10stv2ptenstprobe 2 hsex10stv2ptenstcdf 2 hsfocusptensecdf 2 mm430bmmensgcdf 2 mm430bmmugcdf 2 mm74av1mmenstprobe 2 mm74av2mmensgcdf 3 mm74bv2mmenst 3 mm74cv2mmenseprobe 2 mmex10stv1mmenst 1 mmex10stv1mmentrezgprobe 1 osriceostigr 2 osriceosrefseqprobe 2 ri16cod 4 rn230arnensg 3 rn230arnensecdf 3 vvgrapevvtigrprobe 1 hsfocushsvegatprobe 1 illuminaRatv1 2 hs133bptrefseq 2 OperonHumanV3 3 pedbarrayv9 3 mamurhesusmamuenseprobe 2 hs133phsvegae 2 org.Rn.ipi.db 2 org.Rn.ref.db 4 atgenomeatrefseq7probe 1 hs95av2hsvegaecdf 2 hs133pptrefseq 2 hs133xhsvegag 1 mm430a2mmensecdf 1 org.Hs.bf.db 4 org.HsMm.ortholog.db 3 org.Mm.cross.db 2 homolog.db 2 int.geneint.db 3 BSgenome.Mmusculus.UCSC.mm6 1 illuminaHumanv2ProbeID.db 2 illuminaRatv1ProbeID.db 2 mamurhesusmamuugcdf 1 mamurhesusmamuugprobe 1 mm11ksubammvegae 1 hcgi8k 1 mm430a2mmrefseq 2 mm430a2mmrefseqprobe 2 MeSH.Eco.536.eg.db 0 IlluminaHumanMethylationEPICanno.ilm10b2.hg19 267 TxDb.Ggallus.UCSC.galGal4.refGene 26 TxDb.Sscrofa.UCSC.susScr3.refGene 27 BSgenome.Vvinifera.URGI.IGGP8X 27 clariomshumantranscriptcluster.db 39 rta10transcriptcluster.db 25 clariomdhumantranscriptcluster.db 49 hta20probeset.db 31 MafDb.ESP6500SI.V2.SSA137.hs37d5 7 pd.clariom.s.mouse 46 pd.clariom.d.human 72 pd.clariom.s.human 83 pd.clariom.s.human.ht 31 BSgenome.Celegans.UCSC.ce11 107 TxDb.Rnorvegicus.UCSC.rn6.refGene 97 FlowSorted.CordBloodNorway.450k 1 TxDb.Cfamiliaris.UCSC.canFam3.refGene 28 TxDb.Ptroglodytes.UCSC.panTro4.refGene 24 MafDb.1Kgenomes.phase3.hs37d5 61 BSgenome.Mmulatta.UCSC.rheMac8 47 mta10transcriptcluster.db 27 IlluminaHumanMethylation27kanno.ilmn12.hg19 48 BSgenome.Ptroglodytes.UCSC.panTro5 29 clariomsrathttranscriptcluster.db 24 clariomdhumanprobeset.db 61 MafDb.ESP6500SI.V2.SSA137.GRCh38 7 EnsDb.Hsapiens.v86 2841 pd.clariom.s.mouse.ht 26 lumiMouseIDMapping.db 1 miRBaseVersions.db 167 IlluminaHumanMethylationEPICmanifest 1122 TxDb.Drerio.UCSC.danRer10.refGene 59 TxDb.Mmulatta.UCSC.rheMac3.refGene 25 TxDb.Btaurus.UCSC.bosTau8.refGene 29 MafDb.ExAC.r0.3.1.nonTCGA.snvs.hs37d5 2 MafDb.1Kgenomes.phase1.hs37d5 138 clariomsmousehttranscriptcluster.db 27 mta10probeset.db 31 clariomsmousetranscriptcluster.db 31 clariomsrattranscriptcluster.db 26 rta10probeset.db 25 pd.clariom.s.rat 26 LymphoSeqDB 120 TxDb.Celegans.UCSC.ce11.refGene 45 TxDb.Dmelanogaster.UCSC.dm6.ensGene 188 MafDb.ExAC.r0.3.1.snvs.hs37d5 3 BSgenome.Ggallus.UCSC.galGal5 28 fitCons.UCSC.hg19 27 alternativeSplicingEvents.hg19 27 TxDb.Mmulatta.UCSC.rheMac8.refGene 26 hta20transcriptcluster.db 61 clariomshumanhttranscriptcluster.db 28 pd.clariom.s.rat.ht 24 SNPlocs.Hsapiens.dbSNP149.GRCh38 61 AHCytoBands 21 TxDb.Ggallus.UCSC.galGal5.refGene 40 IlluminaHumanMethylationEPICanno.ilm10b3.hg19 37 MafDb.ExAC.r1.0.hs37d5 42 MafDb.ExAC.r1.0.nonTCGA.hs37d5 27 MafDb.TOPMed.freeze5.hg38 29 MafDb.gnomADex.r2.0.1.hs37d5 5 MafDb.gnomAD.r2.0.1.hs37d5 6 IlluminaHumanMethylationEPICanno.ilm10b4.hg19 1175 GenomeInfoDbData 56572 SNPlocs.Hsapiens.dbSNP150.GRCh38 68 AHEnsDbs 47 alternativeSplicingEvents.hg38 27 JASPAR2018 255 geneplast.data.string.v91 35 BSgenome.Carietinum.NCBI.v1 26 LRBase.Mmu.eg.db 4 LRBase.Cel.eg.db 4 LRBase.Ath.eg.db 5 LRBase.Dre.eg.db 5 LRBase.Bta.eg.db 5 LRBase.Rno.eg.db 5 MafDb.ExAC.r1.0.nonTCGA.GRCh38 28 MafDb.gnomAD.r2.0.1.GRCh38 5 MafDb.1Kgenomes.phase3.GRCh38 47 SNPlocs.Hsapiens.dbSNP151.GRCh38 11 BSgenome.Sscrofa.UCSC.susScr11 48 BSgenome.Aofficinalis.NCBI.V1 25 LRBase.Hsa.eg.db 5 LRBase.Pab.eg.db 5 LRBase.Dme.eg.db 5 MafDb.gnomADex.r2.1.hs37d5 46 LRBase.Ssc.eg.db 5 LRBase.Gga.eg.db 5 org.hs.eg.db 2 TxDb.Sscrofa.UCSC.susScr11.refGene 32 MafDb.gnomADex.r2.0.1.GRCh38 4 MafDb.1Kgenomes.phase1.GRCh38 29 MafDb.TOPMed.freeze5.hg19 27 TxDb.Ptroglodytes.UCSC.panTro5.refGene 21 BSgenome.Ptroglodytes.UCSC.panTro6 27 MafDb.gnomAD.r2.1.hs37d5 32 LRBase.Xtr.eg.db 4 ribosomaldatabaseproject11.5MgDb 4 silva128.1MgDb 5 MafDb.ExAC.r1.0.GRCh38 49 EuPathDB 25 hpAnnot 23 MafDb.gnomAD.r2.1.GRCh38 62 org.Mxanthus.db 33 MafDb.gnomAD.r3.0.GRCh38 5 rat2302frmavecs 24 BSgenome.Btaurus.UCSC.bosTau9 37 go.db 1 TxDb.Celegans.UCSC.ce11.ensGene 88 BSgenome.Cjacchus.UCSC.calJac3 24 BSgenome.Mdomestica.UCSC.monDom5 23 MafDb.gnomADex.r2.1.GRCh38 25 TxDb.Ggallus.UCSC.galGal6.refGene 27 TxDb.Btaurus.UCSC.bosTau9.refGene 29 BSgenome.Drerio.UCSC.danRer11 72 BSgenome.Ggallus.UCSC.galGal6 39 ENCODExplorerData 29 TxDb.Drerio.UCSC.danRer11.refGene 38 GenomicState 72 BSgenome.Mmulatta.UCSC.rheMac10 90 TxDb.Mmulatta.UCSC.rheMac10.refGene 73 TxDb.Ptroglodytes.UCSC.panTro6.refGene 22 EpiTxDb.Hs.hg38 39 MafH5.gnomAD.r3.0.GRCh38 4 EpiTxDb.Mm.mm10 21 CancerSubtypes 0 CellMixS 0 CEMiTool 0 ChAMP 1 JASPAR2020 1770 BSgenome.Amellifera.NCBI.AmelHAv3.1 24 base 1 seqCAT 0 muscat 1 affy 1 AnnotationDbi 15 Biobase 9 BiocParallel 11 BSgenome 3 genefilter 2 GenomeGraphs 0 GenomicFeatures 9 grDevices 1 Gviz 2 IRanges 9 interactiveDisplayBase 1 facets 0 parallel 1 preprocessCore 1 Rgraphviz 1 Ringo 1 tcltk 1 rlang 422 BANDITS 0 CluMSID 0 waddR 0 BiocGenerics 9 MeSH.Eca.eg.db 3 AnnotationHub 3 BiocInstaller 1 Biostrings 12 DNAcopy 1 edgeR 8 ensembldb 4 gage 0 graph 1 graphics 1 pathview 1 rtracklayer 3 XVector 3 DEXICA 0 vcfR 1 phastCons30way.UCSC.hg38 20 EpiTxDb.Sc.sacCer3 21 BiocWorkflowTools 0 BiocSklearn 0 ATACseqQC 1 cliqueMS 0 synergyfinder 0 tradeSeq 1 BSgenome.Dvirilis.Ensembl.dvircaf1 21 BSgenome.Ppaniscus.UCSC.panPan1 23 BSgenome.Ppaniscus.UCSC.panPan2 27 TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq 20 limma 16 annotate 2 biovizBase 1 datasets 1 DESeq 0 DESeq2 7 gdsfmt 1 grid 1 Rsamtools 3 SeqArray 0 SeqVarTools 1 stats 1 zlibbioc 5 coMET 0 CATALYST 1 ggtree 10 universalmotif 1 metaboliteIDmapping 147 geneLenDataBase 10 GenomeInfoDb 14 geneplast.data 37 TxDb.Mmusculus.UCSC.mm39.refGene 97 BSgenome.Creinhardtii.JGI.v5.6 26 rstudio 0 S4Vectors 7 sitePath 0 string 0 KEGGREST 3 methods 1 multtest 1 affyio 1 biomaRt 2 compiler 1 cummeRbund 0 geneplotter 1 GenomicAlignments 3 GenomicRanges 6 KEGGgraph 1 NOISeq 1 splines 1 stats4 1 SummarizedExperiment 3 tools 1 utils 1 VariantAnnotation 1 vsn 1 MafH5.gnomAD.v3.1.1.GRCh38 5 AHLRBaseDbs 25 htratfocus.db 19 hthgu133plusa.db 20 TxDb.Athaliana.BioMart.plantsmart51 34 rGenomeTracksData 33 TxDb.Cfamiliaris.UCSC.canFam5.refGene 18 p 0 AHMeSHDbs 28 AHWikipathwaysDbs 22 Orthology.eg.db 153 htrat230pm.db 19 htmg430a.db 20 htmg430pm.db 22 chromhmmData 42 BSgenome.Mmusculus.UCSC.mm39 197 TxDb.Cfamiliaris.UCSC.canFam4.refGene 19 excluderanges 42 ichorCNA 1 AHPathbankDbs 24 AHPubMedDbs 26 gwascatData 19 hthgu133pluspm.db 28 hthgu133plusb.db 18 BSgenome.Rnorvegicus.UCSC.rn7 82 scAnnotatR.models 18 TxDb.Rnorvegicus.UCSC.rn7.refGene 74 kegg.db 1 TxDb.Hsapiens.UCSC.hg38.refGene 93 htmg430b.db 19 CTCF 30 BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major 29 BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor 30 GeneSummary 32 ontoProcData 20 synaptome.data 29 synaptome.db 32 karyoploteR 0 KaryoploteR 0 u 0 SNPlocs.Hsapiens.dbSNP155.GRCh38 543 BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 94 EBImage 1 phastCons35way.UCSC.mm39 18 MASS 351 HDF5Array 8 globals 67 bookdown 33 evaluate 390 uwot 144 hdrcde 6 colorRamps 10 ggpointdensity 6 blme 7 shinyjs 5 assertive.properties 2 BiocManager 357 rsconnect 28 packrat 10 furrr 10 sparklyr 8 tidytree 28 brew 31 htmltools 310 Matrix 394 fansi 116 scales 86 RColorBrewer 13 knitr 279 nloptr 66 checkmate 210 desc 70 devtools 14 memoise 9 sessioninfo 7 remotes 160 rhdf5filters 2 blob 37 openssl 443 formatR 27 plyr 66 webshot 17 plotly 74 deSolve 3 campsismod 0 xaringanthemer 1 evd 4 epiR 2 dittodb 0 webmockr 0 gamlss.dist 3 ggPMX 0 forecast 7 fork 1 hms 33 jsTreeR 1 ipaddress 0 interp 11 klaR 4 lpSolveAPI 1 multcomp 114 paletteer 13 pdftools 2 precommit 1 pins 6 R.rsp 1 randtoolbox 1 pmtables 1 pkgload 291 partitions 0 reda 0 pointblank 1 rclipboard 5 prismatic 12 Rdpack 19 Rsmlx 0 rhub 3 profile 0 recipes 48 spaMM 1 roxygen2 157 sensitivity 1 s2 32 spam 19 spatialreg 0 tracee 1 terra 28 tweenr 40 statmod 4 vaultr 1 RAthena 7 gplots 159 RandomFields 1 RPostgres 106 RandomFieldsUtils 1 RcppParallel 28 bit64 124 bit 148 leaps 14 BMA 1 geosphere 8 stringdist 13 rpart 51 xmlparsedata 1 loo 14 mice 12 mlbench 9 odbc 18 paws.security.identity 16 r2d3 2 rcdk 7 rematch2 1 dtw 0 plotmo 2 enc 0 expm 13 rJava 113 extraTrees 0 subselect 1 superpc 0 survMisc 1 yardstick 18 paws.cost.management 16 paws.storage 114 FNN 162 SparseM 78 sp 79 readr 91 corpcor 2 sfsmisc 3 docopt 5 sparsesvd 14 ggsignif 7 here 1 lsa 6 randomcoloR 6 susieR 14 coloc 15 Rsolnp 1 Signac 17 perm 8 samr 6 restfulr 9 gsmoothr 5 R.devices 8 Rfast 15 RcppAnnoy 36 waiter 9 FlowSorted.CordBloodCombined.450k 10 isva 5 ccdata 10 NADA 6 truncnorm 3 Markdown 0 circlize 45 shape 66 GMD 0 gtable 251 highr 177 htmlwidgets 93 codetools 97 rngtools 2 tidyr 227 xaringanExtra 1 agricolae 11 tfruns 9 future.apply 182 aplot 47 MAST 1 SingleCellExperiment 8 HDO.db 9946 phyloP35way.UCSC.mm39 17 wk 35 msigdbr 7 HandTill2001 0 ipred 30 bench 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goseq 0 GENESIS 0 scran 2 dupRadar 0 ReportingTools 1 SNPRelate 0 sva 1 annaffy 1 MSnbase 0 AnnotationForge 1 rtkore 0 gWidgets2tcltk 0 spatstat.utils 45 h2o 3 lares 1 rpart.plot 1 gsrc 0 ASExtras4 0 HiCBricks 0 ncdf4 9 stringfish 6 amgen.okta.client 0 DOSE 2 conquer 2 enrichR 3 shinyalert 19 brms 2 collections 1 dotCall64 20 dtwclust 2 languageserver 1 memisc 1 lgr 1 gridtext 3 network 2 PKNCA 1 Runuran 1 smoothHR 0 esquisse 16 nonmemica 1 ucminf 7 visNetwork 3 rj.gd 1 sjPlot 2 imcRtools 0 RobustRankAggreg 0 qqconf 9 FactoMineR 13 BSgenome.Mfascicularis.NCBI.6.0 25 oligo 1 flextable 24 pillar 93 emmeans 44 mathjaxr 1 Seurat 54 ggnewscale 62 RSpectra 98 RSQLite 186 stringr 95 carData 3 parallelly 206 uuid 227 gtools 34 Hmisc 44 htmlTable 35 survival 240 scuttle 8 haven 57 infer 11 ontologyIndex 17 parsnip 14 reprex 79 rrcov 24 rsample 18 treeio 7 bslib 359 mgcv 169 stringi 350 brio 178 colorspace 175 lme4 109 rprojroot 70 pkgbuild 168 rstudioapi 155 RcppArmadillo 232 foreach 7 fs 266 jsonlite 251 BH 219 withr 278 heatmaply 13 seriation 43 corrr 0 admiral 2 Cairo 14 blogdown 0 av 1 asciicast 1 coro 1 covr 5 WeightIt 3 csv 1 yulab.utils 67 flexsurv 1 gam 10 hardhat 47 gmm 1 geepack 8 ggforce 39 geometry 1 gnm 1 gt 49 glmmTMB 4 golem 11 JM 0 gbm 100 lobstr 2 modeldata 10 mrgsolve 1 mlr3measures 2 NonCompart 1 optmatch 4 narray 0 pcaPP 20 paradox 2 randomForestSRC 3 R.utils 46 pls 3 robust 17 RcppCCTZ 1 rbibutils 15 ranger 30 shiny.router 1 RItools 2 RPostgreSQL 4 RBesT 1 transformr 0 sortable 3 rversions 13 splines2 1 svd 2 V8 100 LiblineaR 7 PKI 8 ROCR 2 RMySQL 5 caTools 39 RhpcBLASctl 2 SQUAREM 2 bibtex 2 zip 172 lmtest 4 backports 149 fuzzyjoin 0 boot 89 labelled 24 pROC 22 paws.analytics 16 psych 115 qvcalc 1 rstantools 10 shinystan 1 speedglm 1 proxy 3 xts 36 plotrix 8 ellipse 9 fastGHQuad 1 fastICA 55 paws.database 17 paws.management 16 later 166 doParallel 4 R.methodsS3 7 R.oo 70 rio 22 R6 40 corrplot 49 magic 1 densityClust 1 rcmdcheck 3 gh 148 dials 16 slam 16 polynom 2 gtx 0 kableExtra 19 selectr 1 questionr 1 SMVar 6 metaMA 6 ggseqlogo 15 poweRlaw 12 TFMPvalue 8 extraDistr 9 PSCBS 7 aroma.affymetrix 8 sitmo 7 fresh 16 bitops 146 curl 403 clue 68 permute 2 reshape2 3 RCircos 0 ggpubr 17 ggrepel 241 vaplot 0 ggthemes 16 pracma 17 shinydashboard 3 MOFA2 1 mc2d 2 mvtnorm 96 prodlim 36 numDeriv 2 survminer 7 assertthat 2 xtable 3 markdown 96 waldo 194 diffobj 3 prettydoc 1 MNP 1 ChAMPdata 1 TH.data 107 admiral.test 0 ATE 1 BlakerCI 0 PreciseSums 0 ids 1 rstatix 14 svglite 21 biglm 5 nasapower 0 dendsort 0 lmomco 0 soilDB 0 SPEI 0 lmerTest 1 hierfstat 0 pegas 2 webdriver 0 parsedate 3 listenv 56 rgeos 11 classInt 22 gitcreds 12 leidenbase 13 bsgenome.hsapiens.ucsc.hg19 1 bs4Dash 8 dlstats 0 changepoint 25 admiraldev 2 mrgda 1 mrgvalidate 1 keras 3 nlmixr2extra 1 rxode2 1 RSiena 0 repurrrsive 1 Rcsdp 0 mapdata 1 RsSimulx 0 Tplyr 2 Rwave 6 vioplot 1 nlmixr2plot 1 xpose 0 RODBC 2 ergm 0 gettz 0 beeswarm 1 rmio 1 fit.models 1 binom 0 coin 1 TeachingDemos 2 rappdirs 3 CVST 1 leidenAlg 2 dynamicTreeCut 1 PsNR 0 MultiAssayExperiment 0 lixoftConnectors 0 crrry 0 SC3 1 baySeq 1 DEGseq 1 Rsubread 1 biomformat 1 ballgown 0 survcomp 0 impute 1 mailR 0 fastmatch 23 googledrive 21 cmprsk 4 ccaPP 0 quadprog 1 diceR 1 registry 1 downloader 1 ruv 1 glmmADMB 1 INLA 1 IRkernel 1 qpdf 4 rmdformats 1 ExploreModelMatrix 0 base64enc 1 morpheus 0 clariomdhumantranscriptcluster 0 rols 0 BiocFileCache 4 tkWidgets 0 lumi 1 Wrench 0 PureCN 0 SSPA 1 ProtGenerics 1 oligoClasses 1 RsSimulx.1 0 Rsmlx.2 0 ncdf4.1 0 flowVS 0 Rsmlx.1 0 rvcheck 4 MeSHDbi 1 viridislite 0 spatstat.data 41 ggplotify 16 hunspell 49 svMisc 1 ClusterR 1 askpass 164 DMRcate 1 distill 0 crul 121 gganimate 1 ggcorrplot 2 httr2 174 jomo 1 gee 2 GA 104 ndjson 0 mlr3misc 2 NMproject 1 DHARMa 1 pak 3 reactlog 1 tables 2 Rttf2pt1 1 tictoc 11 tseries 9 clusterCrit 1 forrester.metadata 0 storr 0 creatr 0 UCSCRepeatMasker 23 JASPAR2022 236 BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1 19 BSgenome.Cjacchus.UCSC.calJac4 26 BSgenome.Gmax.NCBI.Gmv40 26 ndexr 0 SNPlocs.Hsapiens.dbSNP155.GRCh37 766 ComplexHeatmap 10 gmp 16 caret 36 gert 122 farver 203 mutoss 8 SeuratObject 41 ALL 10 aws.s3 6 ash 6 fds 6 httr 69 tinytex 383 broom 133 reticulate 95 generics 16 dplyr 98 fontawesome 136 shiny 308 cluster 84 dtplyr 16 rvest 171 paws.compute 101 readxl 39 sass 294 callr 274 ggplot2 323 vctrs 114 Rcpp 363 commonmark 255 TSP 14 iterators 7 processx 301 ps 350 renv 118 DBI 333 locfit 104 snow 8 RCurl 182 data.table 386 dendextend 54 digest 432 magrittr 10 collapse 1 datawizard 17 clock 24 cobalt 1 emayili 2 fields 11 duckdb 8 dockerfiler 1 drake 2 workflows 11 gld 2 ymlthis 0 ggdag 1 ggraph 33 graphlayouts 54 insight 21 mlr3 3 nleqslv 1 lbfgs 0 modelr 19 posterior 10 palmerpenguins 1 quantreg 87 patchwork 96 qs 11 RApiSerialize 9 projpred 1 ParamHelpers 1 saemix 0 R.cache 2 rgl 5 sf 40 tidyposterior 1 tidygraph 28 rstpm2 1 sm 1 rticles 1 TMB 13 tune 12 ISwR 0 ModelMetrics 1 Rtsne 28 RcppProgress 1 openxlsx 106 prettyunits 71 BBmisc 1 robustbase 37 DEoptimR 22 flexmix 2 foreign 58 nnet 37 spatial 26 lintr 117 logistf 8 mclust 16 microbenchmark 14 segmented 31 optparse 47 pamr 1 pander 3 party 92 pscl 2 pwr 0 randomForest 42 rstan 12 rstanarm 1 shinythemes 1 emdbook 8 styler 26 xgboost 118 paws 16 pryr 8 promises 297 fastmap 243 e1071 103 HDInterval 8 RcppEigen 161 utf8 96 conflicted 8 config 16 rex 2 ddalpha 1 git2r 36 testthat 296 dichromat 5 dimRed 1 ivpack 0 km.ci 1 shinypanel 6 mixsqp 16 GWASExactHW 7 igraph 183 egg 6 NMF 16 reldist 8 shinyFiles 11 filelock 50 R.filesets 8 aroma.core 8 RcppHNSW 27 rsvd 8 pRolocdata 10 shinyhelper 6 admisc 8 GeomxTools 0 RcppZiggurat 6 WGCNA 15 ade4 4 ellipsis 5 vegan 45 purrr 87 progressr 51 ggfun 71 distributional 14 gargle 29 flowWorkspaceData 1 minqa 94 gower 19 inum 2 libcoin 3 brave 0 C50 0 Ckmeans.1d.dp 0 Lahman 1 NeuralNetTools 0 RWiener 0 RcppTOML 18 aldvmm 1 ape 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