imageTCGA
This is the development version of imageTCGA; to use it, please install the devel version of Bioconductor.
TCGA Diagnostic Image Database Explorer
Bioconductor version: Development (3.21)
A Shiny application to explore the TCGA Diagnostic Image Database.
Author: Ilaria Billato [aut, cre] (ORCID:
, affiliation: Department of Biology, University of Padova), Marcel Ramos [ctb] (affiliation: CUNY Graduate School of Public Health and Health Policy, New York, NY USA), Sehyun Oh [ctb] (affiliation: CUNY Graduate School of Public Health and Health Policy, New York, NY USA), Levi Waldron [ctb] (affiliation: CUNY Graduate School of Public Health and Health Policy, New York, NY USA), Davide Risso [ctb] (affiliation: Department of Statistical Sciences, University of Padova), Chiara Romualdi [ctb] (affiliation: Department of Biology, University of Padova)
Maintainer: Ilaria Billato <ilaria.billato at phd.unipd.it>
citation("imageTCGA")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("imageTCGA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("imageTCGA")| imageTCGA | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ShinyApps, Software |
| Version | 0.99.5 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), shiny |
| Imports | DT, dplyr, bslib, bsicons, ggplot2, viridis, tidyr, leaflet, clipr, rlang |
| System Requirements | |
| URL | https://github.com/billila/imageTCGA |
| Bug Reports | https://github.com/billila/imageTCGA/issues |
See More
| Suggests | BiocManager, BiocStyle, knitr, curl, glue, rmarkdown, sessioninfo, testthat, tibble, GenomicDataCommons |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | imageTCGA_0.99.5.tar.gz |
| Windows Binary (x86_64) | imageTCGA_0.99.5.zip |
| macOS Binary (x86_64) | imageTCGA_0.99.5.tgz |
| macOS Binary (arm64) | imageTCGA_0.99.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/imageTCGA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/imageTCGA |
| Bioc Package Browser | https://code.bioconductor.org/browse/imageTCGA/ |
| Package Short Url | https://bioconductor.org/packages/imageTCGA/ |
| Package Downloads Report | Download Stats |